1.5.3

Fixed

• Addressing off by one error w/ cell names, expression scores in dense ingest (#123)

1.5.2

Fixed

• Removing overwrite of cell names array in expression ingest (#122)

1.5.1

Fixed

• Corrected typo in data_arrays collection name for expression ingest (#121)

1.5.0

Added

• Initial implementation of parsing MTX (#120)
• Parsing for dense matrices (#108)

Fixed

• Include ontology_browser_url for organ_region in metadata convention (#118)

1.4.0

Added

• Log errors to Sentry (#117)

1.3.10

Added

• Add ontology_browser_url, update cell_type__custom (enum -> string) (#115)
• Coercion of Pandas-inferred NaN values for group annotations to type string (#114)
• Support for publishing scp-ingest-pipeline to PyPI (#103, #110)

Fixed

• Ensure MTX file ingest stores all expression values (#113)
• Ensure coercion of Pandas-inferred numeric values for group annotations to type string by turning off Pandas' low memory option (#112)

1.3.9

Fixes

• Ensure proper delimiter detection for txt files (#106)
• Fix coercion of Pandas-inferred numeric values for group annotations to type string (#106)
• Prevent duplicate gene names in toy matrix (#104)
• Restrict annotation downcasing to cluster coordinate headers (#107)

1.3.8

Added

• fix package dependency to address docker image issue (#105 )

1.3.7

Added

• Inject missing optional ontology labels to metadata backend (#97)
• Add genomes pipeline and script to make toy data for performance engineering (#102)

Fixes

• Undeclared data types for cluster and metadata files so that ingest pipeline returns a status code (#101 )

1.3.6

Changed:

• Align cell_type__custom term with Cell Ontology (CL) terminology 2.1.3 (#98)
• Require cell_type if cell_type__custom provided 2.1.2 (#96)