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Releases: broadinstitute/scp-ingest-pipeline

1.43.7

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@bistline bistline released this 02 Oct 17:10
17653ae

Changed

  • Handled embedded Pandas dataframes in AnnData obsm entries - #422
  • Bump black from 24.3.0 to 26.3.1 - #421
  • Bump requests from 2.32.4 to 2.33.0 - #424
  • Bump pytest from 7.2.1 to 9.0.3 - #425
  • Bump urllib3 from 2.5.0 to 2.8.0 - #426

1.43.6

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@bistline bistline released this 04 Mar 15:48
7e5c7b6

Changed

  • Allow metadata names with periods (#417)
  • Updated AnnData dependencies (#418)
  • Updated base Python version to 3.11 (#420)

1.43.5

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@bistline bistline released this 16 Dec 18:50
792360e

Fixed

  • Correctly detect location of MongoDB documents on insert retries (#412)

1.43.4

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@bistline bistline released this 15 Dec 16:47
4d6daca

Fixed

  • Addressing graceful_auto_reconnect method invocation error (#410)

1.43.3

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@bistline bistline released this 09 Dec 19:12
de4de90

Fixed

  • Pinning to urllib3:2.5.0 to prevent gzip issues when localizing files for ingest (#407)

1.43.2

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@bistline bistline released this 09 Dec 15:24
bf0afe7

Changed

  • Lower batch size to 50 for DotPlotGene inserts (#405)

Fixed

  • Correctly filter inserted DotPlotGene documents during BulkWriterError retries (#405)

1.43.1

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@bistline bistline released this 01 Dec 20:36
5c777c8

Changed

  • Use fallback validation to OLS for taxon ID (#402)

Fixed

  • Updating to Ubuntu 22.04, addressing cloud build errors (#404)

1.43.0

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@bistline bistline released this 14 Jul 18:43
36d165a

Added

  • DotPlotGenes class for pre-computing gene-level dot plot metrics (#399, #401)

1.42.0

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@bistline bistline released this 12 Jun 14:41
a591aa8

Added

  • Remove all BigQuery integration (#397)

Changed

  • Bump requests from 2.32.0 to 2.32.4 (#396)

Fixed

1.41.3

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@bistline bistline released this 15 Apr 16:47
9cde31b

Fixed

  • Make raw_location parameter for differential expression optional (#394)