Releases: broadinstitute/scp-ingest-pipeline
Releases · broadinstitute/scp-ingest-pipeline
1.43.7
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Changed
Handled embedded Pandas dataframes in AnnData obsm entries - #422
Bump black from 24.3.0 to 26.3.1 - #421
Bump requests from 2.32.4 to 2.33.0 - #424
Bump pytest from 7.2.1 to 9.0.3 - #425
Bump urllib3 from 2.5.0 to 2.8.0 - #426
1.43.6
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Changed
Allow metadata names with periods (#417 )
Updated AnnData dependencies (#418 )
Updated base Python version to 3.11 (#420 )
1.43.5
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Fixed
Correctly detect location of MongoDB documents on insert retries (#412 )
1.43.4
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Fixed
Addressing graceful_auto_reconnect method invocation error (#410 )
1.43.3
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Fixed
Pinning to urllib3:2.5.0 to prevent gzip issues when localizing files for ingest (#407 )
1.43.2
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Changed
Lower batch size to 50 for DotPlotGene inserts (#405 )
Fixed
Correctly filter inserted DotPlotGene documents during BulkWriterError retries (#405 )
1.43.1
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Changed
Use fallback validation to OLS for taxon ID (#402 )
Fixed
Updating to Ubuntu 22.04, addressing cloud build errors (#404 )
1.43.0
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Added
DotPlotGenes class for pre-computing gene-level dot plot metrics (#399 , #401 )
1.42.0
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Added
Remove all BigQuery integration (#397 )
Changed
Bump requests from 2.32.0 to 2.32.4 (#396 )
Fixed
1.41.3
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Fixed
Make raw_location parameter for differential expression optional (#394 )