1.3.3

Added

• Adds format validations for cell metadata and cluster file. (#92)

1.3.2

Bugfixes:

• Handle nan __ontology_label values in metadata validation (#89)
• Update alexandria metadata convention to 2.0.1 (#90)
  • fix preservation_method enum
  • apply extended ontology id syntax to all ontologies in convention, not just array objects
• Fix metadata of type "group" behaving as float post-ingest for array metadata (#91)

1.3.1

• Fix metadata of type "group" behaving as float post-ingest (#85)

1.3.0

Alexandria metadata convention 2.0.0 changes:

• deprecate sample_type in favor of biosample_type and preservation_method
• is_living now optional metadata
• update library_preparation_protocol root to Experimental Factor ontology:library preparation
• remove "defaults" column
• add PATO as second allowed ontology for disease

record metadata_convention_version in metadata backend
metadata convention under source control

1.2.1

Fix metadata validation to allow optional metadata to have empty (nan) values (#81)

1.2.0

• Includes logic for calculating organism age (#80)
• Captures metadata convention validation errors via logger (#78)
• Regularizes stored ontology IDs (#79)

1.1.1

• Fixing docker build issues caused by profiler requirements (#77)

1.1.0

• Adding exponential backoff & jitter for external API requests (#76)
• Optional memory profiling (#74)

1.0.0-rc1

• Adding timeouts/sleep statements to throttle external API calls (#72)
• Test ingest for cluster files and metadata files (#73)

0.10.4

• Add Stackdriver logging to Ingest Pipeline (#68)
• Restore error report on detection of invalid cell metadata file format (#69)
• Test ingest_files.py (#63)
• Upgrade Docker to use Python 3.7 (#70)