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Harald Schilly edited this page Dec 1, 2018 · 38 revisions

This page contains notes about new software upgrades for the "default" environment.

2018-12-01

2018-11-28

  • (Sage/upd) Sage Development updated to 8.5.beta5
  • (Linux/upd) noteworthy minor updates: vs code: 1.29.1, bazel: 0.19.2, idle: 3.6.7, python3: 3.6.7, postgresql: 11.1
  • (Py3/new) NOAA SDK
  • (Py3/upd) yapf 0.25, tensorflow 1.12, tensorboard 1.12, tensorflow-probability 0.5, scikit-learn 0.20.1, numba 0.40.1, arctic 1.73 (also Py2)

2018-11-13

2018-11-10

2018-11-03

  • (py2/py3 updates): Bokeh 1.0, Sphinx 1.8.1, Plotly 3.3.0, tensorflow 1.11 (py3 only), Pip 18.1
  • (Sage/upd) Sage Development version updated to 8.5.beta2
  • (py3/new)
  • (x11) xdotool, xclip, xvfb update
  • (linux/upd) broad Linux update, in particular rustc 1.28, cargo 0.29, bazel 0.19, ...
  • (node.js/upd) noteworthy are typescript 3.1.4, coffeescript 2.3.2, prettier 1.14.3, reveal-md 2.3.0 and tldr 3.2.5
  • (R/upd) updating some packages like dplyr, knitr, data.table, plotly, etc.
  • (R/new) export package
  • (R/new) installing "swirl" courses globally for R. Create an "X11 Desktop" file, run R, and then start it: 
    > require(swirl)
> swirl_options(swirl_data_dir = "/home/user/swirl")
> swirl()

2018-10-27

  • (upd) SageMath 8.4 as the new default Sage version.
    • Run sage_select in a terminal to change the default in a project.
    • known issue: libhomfly not available, because it doesn't compile
  • (upd) SageMath development version 8.5.beta0

2018-10-18

  • (new) Sage 8.4 (default still 8.3). Use sage_select to switch it, test it, and maybe give us feedback.
  • (new) PostgreSQL 11 (default still 10). It's in /usr/lib/postgresql/11/bin/. To use it, fix your path, e.g. via path-remove "/usr/lib/postgresql/10/bin"; path-append "/usr/lib/postgresql/11/bin" in your ~/.bashrc.
  • (upd) overall Linux software update. notable:
    • git (1:2.17.1-1ubuntu0.3)
    • texlive-binaries (2017.20170613.44572-8ubuntu0.1)
  • (new) xpra/websockify
  • (new) couple of X11 related software, like PSPP, Gimp, LibreOffice, ...
  • (fix) relaxing policies for ImageMagick to be able to run convert on PDF files.

2018-10-06

  • (upd/enh) Julia 1.0.1 and associated Julia Jupyter kernel
    • in a terminal, run julia-1 to get the 1.0.1 release.
  • (new) Ada programming language (Ada wikibook), including syntax highlighting of *.adb files
  • (upd) overall Linux software update, in particular OpenCV libraries and python-opencv
  • (new/lib) libopenblas-dev for building C/Fortran code on top of it
  • (new/bin) screen, powerline, glances, docsify, gnat (GNU Ada compiler)
  • (env) changing TERM=xterm-256color default environment variable
  • (env) global config file for htop
  • (new/py2,py3): prettytable
  • (chg) switching videochat from https://appear.in to https://meet.jit.si
  • (new/py3) jupytext, notedown, control, and slycot
  • (upd/py3) jupyter nbconvert (just 5.3.1 to 5.4.0, but there could be noticeable changes)
  • (bug/py) there are known issues with mpl_toolkits/Basemap -- please use Ubuntu's Python 3 environment.

2018-09-29

  • (upd) broad Linux software packages update, including minor updates to bazel, chrome, curl and python3.6
  • (upd/py3) "pip3" 18.0, seaborn 0.9.0, geopandas 0.4.0, and scikit-learn 0.20.0
  • (upd/py2) "pip2" 18.0, seaborn 0.9.0, tensorflow 1.10.1
  • (rem/ac5) removing broken pandas-datareader from anaconda5 (no update available yet, use Ubuntu's Python 3)
  • (new/npm) tldr pages

2018-09-23

  • (upd) broad round of updating Anaconda 5 packages
  • (rem) Removal of PostgreSQL 9.6. We provide the 10.x series by default.
    • for the purpose of upgrading, the old install is kept in /usr/lib/postgresql/9.6/ for a little while.
  • (fix) pandas-datareader incompatibility resolved
  • (upd/py3) dask/distributed, SymPy 1.3, Numba 0.38.1/llvmlite, and pandas-datareader 0.7.0
  • (upd/py2) pandas 0.23.4 and pandas-datareader 0.7.0
  • (upd) LEAN (https://leanprover.github.io/) mathlib to rev d0f1b21a9df64f, located in /ext/lean/lean-3.4.1-linux/mathlib/.
  • (new/py2+py3) pyLADvis
  • (new) C++ 17 Jupyter kernel via xeus-cling
  • (upd) SageMath release 8.4.beta6 2018-09-22

2018-09-15

  • (new) R packages: roperators and a couple from R Views 2018-07
  • (upd) bazel 0.17.1
  • (upd) nodejs 8.12 (+ npm package updates)
  • (upd) relaxing browser compatibility check specifically for newest Firefox 60.2 ESR
  • (upd) major changes in handling RMarkdown files
  • (new) support for automatically processing PythonTeX code in LaTeX documents
  • (new) additional Library entries for RMarkdown and LaTeX/PythonTeX examples
  • (new) first iteration to support LEAN
  • (upd) SageMath 8.4.beta5 (released on 2018-07-16)

2018-09-11

2018-09-08

  • (fix) irregularities with man-pages introduces in previous update
  • (compat) Firefox 62 was released, which works well again with CoCalc's websocket over Cloudflare
  • (upd/py3) tensorflow 1.10.1
  • (upd/node) npm 5.6.0 → 6.4.1, typescript 3.0.3, CoffeeScript 2.3.1 and a couple other global node packages
  • (upd/linux) headless chrome 69, and a couple of linux system libs
  • (upd/sage) SageMath development 8.4beta4 available
  • (upd/anaconda) broad package upgrade of Anaconda5 environment
  • (chg) Jupyter plots done via R in Sage output SVG by default

2018-09-01

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