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    • bits-appengine

      Public
      BITS AppEngine Python Package
      Python
      •0•0•0•1•Updated Jan 20, 2025Jan 20, 2025

    • PTA_Analysis

      Public
      WDL
      •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      dockerapplicationcloudbioinformaticsscalaexecutorhpccontainerswdlga4gh
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •360•1k•745•49•Updated Jan 20, 2025Jan 20, 2025

    • sherlock

      Public
      DSP DevOps's deployment source-of-truth service
      golangpostgresgorm
      Go
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•10•Updated Jan 20, 2025Jan 20, 2025

    • seqr-helm

      Public
      Helm charts for the seqr project
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jan 20, 2025Jan 20, 2025

    • backstage

      Public
      Broad Institute Engineering Portal is an Internal Developer Platform (Spotify Backstage by another name)
      TypeScript
      •0•2•1•2•Updated Jan 19, 2025Jan 19, 2025

    • BEClust3D

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•8•Updated Jan 19, 2025Jan 19, 2025

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      sciencebioinformaticsgenomicsgenomengssequencingdnasparkgatk
      Java
      •
      Other
      •596•1.7k•1.2k•136•Updated Jan 19, 2025Jan 19, 2025

    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •100•207•7•16•Updated Jan 19, 2025Jan 19, 2025

    • ist_benchmarking

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Jan 19, 2025Jan 19, 2025

    • monorepo

      Public
      Compendium of tools for the Imaging Platform
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•9•9•0•Updated Jan 18, 2025Jan 18, 2025

    • dig-dug-portal

      Public
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•1•Updated Jan 18, 2025Jan 18, 2025

    • jump-profiling-recipe

      Public
      Workflow for processing cpg0016-jump profiles
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•2•6•1•Updated Jan 17, 2025Jan 17, 2025

    • variant-curation-portal

      Public
      Web application for curating loss of function variants
      Python
      •
      MIT License
      •1•4•47•3•Updated Jan 17, 2025Jan 17, 2025

    • gatk-sv

      Public
      A structural variation pipeline for short-read sequencing
      bioinformaticsgenomicsstructural-variationstructural-variants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •72•175•74•24•Updated Jan 17, 2025Jan 17, 2025

    • ml4h

      Public
      Python
      •
      Other
      •24•126•30•21•Updated Jan 17, 2025Jan 17, 2025

    • mitograph

      Public
      Rust
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • rawls

      Public
      Rawls service for DSDE
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •4•26•0•10•Updated Jan 17, 2025Jan 17, 2025

    • seqr

      Public
      web-based analysis tool for rare disease genomics
      Python
      •
      GNU Affero General Public License v3.0
      •89•180•54•4•Updated Jan 17, 2025Jan 17, 2025

    • depmap-portal

      Public
      Code for the DepMap portal at depmap.org
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•7•0•6•Updated Jan 17, 2025Jan 17, 2025

    • seqr-loading-pipelines

      Public
      hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
      Python
      •
      MIT License
      •20•22•24•2•Updated Jan 17, 2025Jan 17, 2025

    • thurloe

      Public
      A simple service to store arbitrary key/value pairs
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•4•Updated Jan 17, 2025Jan 17, 2025

    • dsp-appsec-infrastructure-apps

      Public
      This repository hosts DSP AppSec internal infrastructure apps deployed in GKE.
      application-securityappsecsecurity-scannersecure-developmentsecurity-automationsecurity-toolsdevsecopssecurity-scanappsecurityappsec-tools
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•0•5•Updated Jan 17, 2025Jan 17, 2025

    • repo-metrics-py

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • ABC-Enhancer-Gene-Prediction

      Public
      Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
      Python
      •
      MIT License
      •64•211•7•0•Updated Jan 17, 2025Jan 17, 2025

    • workbench-libs

      Public
      Workbench utility libraries
      Scala
      •
      Other
      •4•9•0•3•Updated Jan 17, 2025Jan 17, 2025

    • juniper

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •5•9•0•5•Updated Jan 17, 2025Jan 17, 2025

    • celldega

      Public
      Spatial omics analysis and visualization library
      Jupyter Notebook
      •
      Other
      •0•4•1•7•Updated Jan 17, 2025Jan 17, 2025

    • ops-terra-utils

      Public
      Python
      •0•3•0•1•Updated Jan 17, 2025Jan 17, 2025

    • viral-baseimage

      Public
      Broad Viral Genomics base docker image
      Shell
      •
      Other
      •1•1•1•1•Updated Jan 17, 2025Jan 17, 2025