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Remove BETA tag from VETS tools

Status: Open.

#9345 In broadinstitute/gatk;

· jonn-smith opened on Mar 11, 2026

ETA on new release built with htsjdk 4.3.0 for CRAM 3.1 support

Status: Open.

#9341 In broadinstitute/gatk;

· EddieLF opened on Mar 3, 2026

Funcotator - BRCA2 mutation with ambiguous annotation

Status: Open.

#9339 In broadinstitute/gatk;

· BarrecaM opened on Feb 27, 2026

Bitwise OR of a signed byte value

Status: Open.

#9331 In broadinstitute/gatk;

· scuniff opened on Feb 17, 2026

UmiAwareMarkDuplicatesWithMateCigar does not honour --TAGGING_POLICY

Status: Open.

#9328 In broadinstitute/gatk;

· DaGaMs opened on Feb 11, 2026

issue with SelectVariants output file

Status: Open.

#9326 In broadinstitute/gatk;

· hddesai opened on Feb 10, 2026

GATK 4.6.2.0 includes unresolved Critical CVE (CVE-2024-51504)

Status: Open.

#9325 In broadinstitute/gatk;

· Zenram opened on Feb 10, 2026

Resource bundle access denied

Status: Open.

#9321 In broadinstitute/gatk;

· sbaross opened on Feb 2, 2026

Use of java.util.Random to generate seed causes failure

Status: Open.

#9317 In broadinstitute/gatk;

· MattWellie opened on Jan 29, 2026

Funcotator cannot read integer value for start/end position

Status: Open.

#9309 In broadinstitute/gatk;

· chstubbe opened on Jan 15, 2026

Issue with Calculating FS and SOR in GATK VariantAnnotator

Status: Open.

#9306 In broadinstitute/gatk;

· Joyjoyjoyc opened on Dec 31, 2025

CalculateContamination, OutOfRangeException, IllegalArgumentException: log10p: Log10-probability

Status: Open.

#9298 In broadinstitute/gatk;

· feiloo opened on Nov 18, 2025