Skip to content

Issues: kblin/ncbi-genome-download

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

44 Open 101 Closed
44 Open 101 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

ncbi-genome-download works with refseq for me, but not genbank
#234 opened Nov 19, 2024 by Laura-Alex
1
file type requested not found in NCBI
#232 opened Aug 27, 2024 by mvalvano
1
Failing during checking assembly? question
#224 opened Jun 13, 2024 by Thomieh73
1
Host Link Could be Incorrect not shipped yet
#223 opened Mar 12, 2024 by Mohammed-Quraishi
2
/path error when running ncbi-genome-download in a shell script need info Needs more info from the issue reporter
#216 opened Sep 19, 2023 by KinSimon96
1
gimme_taxa.py / ngd mismatched format not shipped yet
#215 opened Aug 27, 2023 by zreitz
2
Collect author info from other ncbi-genome-download contributors. enhancement
#214 opened Jul 28, 2023 by kblin
Can't download unclassified organisms
#206 opened May 10, 2023 by MatthieuBoulinguiez
Number of genomes downloaded not corresponding to number of entries
#205 opened Apr 16, 2023 by arfaiq
1
Check if accessions has CDS?
#203 opened Feb 21, 2023 by ElinorSterner
1
Option for metadata file only
#202 opened Jan 31, 2023 by Ahmed-Shibl
1
Feature request: filter by length of sequence
#199 opened Dec 17, 2022 by Tylersuard
Databases version
#197 opened Oct 4, 2022 by SergeyBaikal
Missing genomes when downloading with genura
#196 opened Sep 22, 2022 by WEIGUO93
.I use commond line" ncbi-genome-download --formats fasta viral" to load refseq virus,it is 1847 complete squeuces in total,is it right?
#195 opened Apr 18, 2022 by qinjunjun
3
Error while downloading genera
#194 opened Apr 11, 2022 by sanyalab
Downloading of cDNA, GFF3, and EST sequences
#193 opened Apr 8, 2022 by sanyalab
newB question - can I get the "reference" genome for a tax ID?
#192 opened Mar 22, 2022 by RichardCorbett
Download problem
#191 opened Mar 22, 2022 by XLOXL
2
ERROR: No downloads matched your filter. Please check your options.
#174 opened Sep 29, 2021 by jolespin
1
Pseudogenes download
#143 opened Apr 4, 2021 by gkoulouras
2
Filenames with genus, species and strain?
#142 opened Jan 29, 2021 by johanneswerner
Reference sequence
#141 opened Jan 21, 2021 by kate-simonova
problems downloading genome
#140 opened Dec 1, 2020 by Timmywang1
1
Some RefSeq genomes not being downloaded
#139 opened Nov 2, 2020 by sskashaf
ProTip! Find all open issues with in progress development work with linked:pr.