You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello kblin!
When I use the following statement to download:
>ncbi-genome-download -g delete1.txt bacteria -F fasta
the following problems arise:
Download from NCBI failed: ConnectionError(MaxRetryError("HTTPSConnectionPool(host='ftp.ncbi.nlm.nih.gov', port=443): Max retries exceeded with url: /genomes/all/GCF/002/177/455/GCF_002177455.1_ASM217745v1/md5checksums.txt (Caused by NewConnectionError('<urllib3.connection.VerifiedHTTPSConnection object at 0x7f7fce0c8ba8>: Failed to establish a new connection: [Errno -2] Name or service not known'))"))
The text was updated successfully, but these errors were encountered:
There seems to be a number of same issues describing this exact problem on the issues page.
For future reference, if you're seeing the same message it almost exclusively means there's a network problem, and not ncbi-genome-download issue.
The problem could be:
Your computer's network policy is wonky - are you behind a firewall by any chance? Some school networks prohibit connection to outside FTP from some weird reason.
NCBI is down for maintenance - while they tend to have excellent uptime for what they are/do, the service does go down occasionally for maintenance. You can check for current status here: https://www.ncbi.nlm.nih.gov/down/
In my case, I'm seeing the same message and have confirmed NCBI ftp servers are offline today for maintenance and update.
Hello kblin!
When I use the following statement to download:
>ncbi-genome-download -g delete1.txt bacteria -F fasta
the following problems arise:
Download from NCBI failed: ConnectionError(MaxRetryError("HTTPSConnectionPool(host='ftp.ncbi.nlm.nih.gov', port=443): Max retries exceeded with url: /genomes/all/GCF/002/177/455/GCF_002177455.1_ASM217745v1/md5checksums.txt (Caused by NewConnectionError('<urllib3.connection.VerifiedHTTPSConnection object at 0x7f7fce0c8ba8>: Failed to establish a new connection: [Errno -2] Name or service not known'))"))
The text was updated successfully, but these errors were encountered: