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Issues list

Wrapping LEMUR tool for scRNAseq data in Galaxy 🧬
#6820 opened Mar 7, 2025 by dianichj
plasmidfinder the specified database directory does not exist! (due to an extra comma)
#6810 opened Feb 27, 2025 by dadrasarmin
6
Enhancement: Clarify mutually exclusive pipeline options on the SPADes tool form + fix non-submission bug
#6741 opened Feb 10, 2025 by jennaj
PCA plot: adjust the labeling (cropped, overlapping labels)
#6722 opened Feb 5, 2025 by KristinaGomoryova
CheckM2 Data Manager writes to CheckM2 install dir
#6717 opened Feb 3, 2025 by natefoo
9
Scatterplot: select the columns based on colnames rather than position in the table
#6692 opened Jan 23, 2025 by KristinaGomoryova
1
3
Volcano plot: select the columns based on colnames instead of position
#6691 opened Jan 23, 2025 by KristinaGomoryova
1
1
Add Genes statistics file to snpeff output
#6688 opened Jan 22, 2025 by paulzierep
Bug in xml wrapper for busco (causing emtpy output files, without any warnings/errors)
#6664 opened Jan 8, 2025 by lsterck
1
Unbound variable 'input'. in picrust2 pipeline
#6655 opened Jan 5, 2025 by bgruening
1
Enhancement: Update Kallisto wrapper adding option to save stdout as a dataset for MultiQC use
#6610 opened Dec 4, 2024 by jennaj
1
omamer datamanager broken
#6585 opened Nov 24, 2024 by bernt-matthias
7
Update to codeML?
#6582 opened Nov 21, 2024 by jaredbernard
bcftools_consensus has duplicate mask options
#6546 opened Nov 10, 2024 by pvanheus
Request for clusterprofiler update
#6535 opened Nov 5, 2024 by nilchia
2
samtools_bam_to_cram does not store genome deltas
#6523 opened Nov 5, 2024 by alpapan
15
Updating RepeatMasker to 4.1.7.1
#6502 opened Oct 31, 2024 by SaimMomin12
Toolshed category typo
#6501 opened Oct 31, 2024 by nomadscientist
Goseq with custom gene-go-category term inputs = bad scientific outputs
#6500 opened Oct 30, 2024 by jennaj
hicBuildMatrix cannot take space-separated list for Sequence of the restriction site or Dangling sequence
#6505 opened Oct 30, 2024 by bskubi
1
8
BBDuk: fails on auto-uncompressed fastq with spaces in filenames.
#6495 opened Oct 28, 2024 by hexylena
1
[meta] updating old tools / python version pinning by default
#6488 opened Oct 25, 2024 by hexylena
2
Funannotate data manager links to BUSCOs are out of date
#6478 opened Oct 22, 2024 by martindemko
1
reshape2: cast/melt require en_US.UTF-8, other assorted issues.
#6467 opened Oct 18, 2024 by hexylena
1
Request: Consider including additional command line parameters on BBduk wrapped tool form
#6448 opened Oct 10, 2024 by jennaj
ProTip! Updated in the last three days: updated:>2025-03-06.