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hyphy_fel: job exits 1 with no diagnostic — stderr contains only ignored OpenMPI warnings

Status: Open.

#8392 In galaxyproject/tools-iuc;

· afgane opened on Sep 5, 2026

kmindex query: multi-index ("all indices") query fans out to thousands of per-shard datasets with no aggregated output

Status: Open.

#8389 In galaxyproject/tools-iuc;

· nekrut opened on Sep 3, 2026

LexicMap Search: multi-FASTA query returns only the first sequence's results (merge step reads one line)

Status: Open.

#8388 In galaxyproject/tools-iuc;

· nekrut opened on Sep 3, 2026

Data Manager table values should identify data, not installation time

Status: Open.

#8360 In galaxyproject/tools-iuc;

· mvdbeek opened on Aug 28, 2026

[Tool] ViReMa (Virus Recombination Mapper) — bioconda recipe stuck at 0.6/python2 while upstream is at 0.33

tool request

Status: Open.

#8326 In galaxyproject/tools-iuc;

· QuandongPan opened on Aug 19, 2026

Additional output for Stacks2: population

Status: Open.

#8323 In galaxyproject/tools-iuc;

· igormakunin2 opened on Aug 18, 2026

sra_tools: /http/timeout/read = "1000" in wrapper configfile sets a 1-second HTTP read timeout

Status: Open.

#8316 In galaxyproject/tools-iuc;

· pauldg opened on Aug 14, 2026

Call for Support: Updating outdated metagenomics tools on IUC

microGalaxy

Status: Open.

#8301 In galaxyproject/tools-iuc;

· SaimMomin12 opened on Aug 11, 2026

Async tool-submission test regressions

Status: Open.

#8283 In galaxyproject/tools-iuc;

· guerler opened on Aug 6, 2026

Warning: TargetFinder stderr messages like "Use of uninitialized value $offset in substr at /usr/local/bin/targetfinder.pl line 537"

Status: Open.

#8165 In galaxyproject/tools-iuc;

· jennaj opened on Jul 6, 2026

Tool request: OpenFold3

tool request

Status: Open.

#8144 In galaxyproject/tools-iuc;

· B0r1sD opened on Jun 26, 2026

CI setup for ITs

Status: Open.

#8137 In galaxyproject/tools-iuc;

· bernt-matthias opened on Jun 25, 2026