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Issues list

Uploading same file from 2 different sources enhancement New feature or request
#111 opened Mar 20, 2025 by khoroshevskyi
bedboss geo uploader doesn't process multiple files from same gsm bug Something isn't working likely-solved priority-high
#110 opened Mar 20, 2025 by khoroshevskyi
Speed up calculation of the 'Open Chromatin' plot. enhancement New feature or request likely-solved
#109 opened Mar 5, 2025 by khoroshevskyi
@kinganimz
Add initial QC for processing files from GEO likely-solved
#108 opened Mar 5, 2025 by khoroshevskyi
@khoroshevskyi
Add a digest for bed file after sorting
#105 opened Feb 21, 2025 by donaldcampbelljr
@khoroshevskyi
1
Add more bed classifier tests. bedClassifier likely-solved
#102 opened Feb 13, 2025 by donaldcampbelljr
@donaldcampbelljr
Rename bed_format options bedClassifier likely-solved
#100 opened Feb 12, 2025 by donaldcampbelljr
3
Upload "bed header" information along with the bed file blocked Waiting for other package to be released
#98 opened Jan 28, 2025 by donaldcampbelljr
@khoroshevskyi
1
Add full file name plus its extension to the table during processing and upload likely-solved
#97 opened Jan 28, 2025 by donaldcampbelljr
@khoroshevskyi
Add "File Too Large" Error to the error types likely-solved
#96 opened Jan 28, 2025 by donaldcampbelljr
Add submission date to the table likely-solved question Further information is requested
#95 opened Jan 28, 2025 by donaldcampbelljr
@khoroshevskyi
For beds with columns that do not adhere to the formal specification, can we generate a schema for them? bedClassifier question Further information is requested
#94 opened Jan 28, 2025 by donaldcampbelljr
@donaldcampbelljr
Rename bed_type column to bed_compliance bedClassifier likely-solved
#93 opened Jan 28, 2025 by donaldcampbelljr
1 task done
@khoroshevskyi
4
Create an ontology of genomic region file formats in JSON format bedClassifier
#92 opened Jan 28, 2025 by donaldcampbelljr
@donaldcampbelljr
1
Extend bed formats to bed classifier, e.g. gappedPeak bedClassifier likely-solved
#91 opened Jan 28, 2025 by donaldcampbelljr
@donaldcampbelljr
5
Switch bedToBigBed to bigTools written in rust enhancement New feature or request
#89 opened Jan 16, 2025 by khoroshevskyi
@khoroshevskyi
2
Ref genome validator - improvements
#86 opened Nov 19, 2024 by khoroshevskyi
@donaldcampbelljr
check bed classifier bedClassifier likely-solved
#82 opened Nov 3, 2024 by khoroshevskyi
@donaldcampbelljr
22
speed up bedboss / bedboss profiling brainstorming
#78 opened Sep 27, 2024 by khoroshevskyi
1
Should we standardize bed files? brainstorming question Further information is requested
#62 opened Apr 11, 2024 by khoroshevskyi
2
bedset - create new statistics and metadata brainstorming
#55 opened Mar 21, 2024 by khoroshevskyi
1 task
Bedqc: improving bedqc filter brainstorming
#48 opened Jan 27, 2023 by xuebingjie1990
2
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