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Releases: broadinstitute/scp-ingest-pipeline

1.13.0

01 Feb 16:27
e5625e2

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Added

  • Log ingest annotation validation errors to Mixpanel (#228)

1.12.4

08 Dec 23:06

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Changed

  • Reject cluster file if coordinate value of NaN detected (#224)
  • Validate nonconventional numeric metadata values are numeric (#225)
  • Improve handling of "Excel drag" ontology ID error in Ingest Pipeline validation (#226 )

Fixed

  • Restore storage of numeric array-based metadata annotation values (#223)

1.12.3

15 Nov 19:10
37136b5

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Changed

  • Update matrix ingest error message to include value where ValueError occurs (#220)
  • Store metadata annotations but not values for large group-based annotations (#221)

1.12.2

26 Oct 18:54
391f12a

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Changed

  • Include Exact Synonym as part of relaxed ontology label validation (#216)

Fixed

  • Remove relocated IngestPipeline method (#218)

1.12.1

15 Oct 14:23
de22060

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Changed

  • Relocated IngestPipeline method for metadata validation to CellMetadata Class (#216 )

Fixed

  • updated import statements to restore support for manage-study (#216 )

1.12.0

27 Sep 14:51
1b4d9ee

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Added

  • Correctly handle BulkWriteErrors and discard any documents that have already been saved (#214)

Fixed

  • Addressed regression in ingest/genomes/utils.py w/ gzipped content writing (#214)

1.11.0

08 Jun 14:56
0b6289d

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Added

  • Relax exact matching of ontology labels to allow synonyms (#211)

1.10.2

18 Mar 13:25
59176c5

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Fixed

  • Preserve leading 0s in cell metadata and cluster files. (#200 )
  • Store numeric arrays as group (#205)
  • Added tests for cell metadata updates ( #209 )
  • Strip white space in metadata and cluster headers (#208)

1.10.1

02 Mar 00:19
a440aa6

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  • Fixed
    • cluster subsample bug preventing subsample of clusters whose first cell was not the metadata file's first cell #207

1.10.0

03 Feb 20:12
5333b6e

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Added

  • adds user identifier in logs from Ingest Pipeline to Bard (#203)