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Issues list

Clean-up property type variables in the ChadoPublish class. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#2149 opened Mar 7, 2025 by laceysanderson
Property Fields are brittle. bug - confirmed For issues where a core developer has confirmed a bug exists. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views Priority - High Any issue/PR which has a noticable impact on usability of the system + would often be encountered.
#2119 opened Feb 14, 2025 by laceysanderson
1
@laceysanderson
1
Update how we install Chado to better control schema Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views Priority - Low Any issue/PR which is not currently a priority according to the PMC.
#2072 opened Dec 21, 2024 by laceysanderson
1 of 5 tasks
Support tokens for field properties Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Priority - Low Any issue/PR which is not currently a priority according to the PMC.
#2065 opened Dec 17, 2024 by laceysanderson
Revisit schema settings for TripalEntity, TripalField and ChadoField bug - confirmed For issues where a core developer has confirmed a bug exists. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views Group 9 - Automated Testing Any issue related to automated testing including needed test cases, concerns, etc.
#1999 opened Oct 10, 2024 by laceysanderson
Support URL Redirects in addition to URL Alias' Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1987 opened Oct 4, 2024 by laceysanderson
1
Reload/Sync button on Tripal Content pages Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#1975 opened Sep 16, 2024 by laceysanderson
Field Settings form is not aware of updates to the schema bug - confirmed For issues where a core developer has confirmed a bug exists. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#1936 opened Jul 25, 2024 by laceysanderson
@laceysanderson
Improve Chado Storage error messages Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#1880 opened May 24, 2024 by laceysanderson
@laceysanderson
TripalDocker: First page load is VERY SLOW Group 8 - Other Integrations Any issue related to integration of other Drupal modules, external libraries, extension modules. Group 10 - Performance Any issue related to performance concerns and/or ideas for improvement.
#1857 opened Apr 23, 2024 by laceysanderson
1
@laceysanderson
Ensure field labels and descriptions are translatable text bug - confirmed For issues where a core developer has confirmed a bug exists. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1856 opened Apr 21, 2024 by laceysanderson
2
Attribution fields on project/analysis-based content types Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. PMC - Discussion Discussions requiring input from the project management committee (PMC)
#1845 opened Apr 11, 2024 by laceysanderson
@laceysanderson
1
Sequence Field infers sequence based on location Community - Please Contribute Any issues that could used a contributed fix but is not the focus of the Tripal Core Developers. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1836 opened Mar 29, 2024 by laceysanderson
3
Generic way to Group Terms from multiple ontologies for a select list Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#1728 opened Jan 5, 2024 by laceysanderson
Update the Taxonomy Importer to use real ontology terms. Group 4 - Data Importing Any issue relating to importing of biological data into either Chado or any other database. Group 6 - Web Services Any issue relating to web services, microservices, semantic web integration, etc.
#1726 opened Jan 3, 2024 by laceysanderson
1
Production-focused Tripal Docker Group 0 - Maintenance | Docker | Misc Any issue that doesn't fit into the other groups (i.e. docker, github actions)
#1670 opened Oct 30, 2023 by laceysanderson
New Storage properties require addition to the schema YML Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1653 opened Sep 25, 2023 by laceysanderson
Move function-focused legacy API into a separate core submodule Group 0 - Maintenance | Docker | Misc Any issue that doesn't fit into the other groups (i.e. docker, github actions)
#1646 opened Sep 22, 2023 by laceysanderson 4.0-alpha3
@laceysanderson
2
Drush command to create Chado Fields. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1606 opened Aug 14, 2023 by laceysanderson
1
Fix Placeholder setting in fields that's not set-able Good First Issue Any issue that is appropriate for a new contributor to try addressing. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1600 opened Aug 10, 2023 by laceysanderson
1
Create test for ChadoOrganismDefault Field Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 9 - Automated Testing Any issue related to automated testing including needed test cases, concerns, etc.
#1587 opened Jul 24, 2023 by laceysanderson
OBO Importer: Cannot find term: 'NCIT:C25693' when importing into 2nd chado schema bug - potential For issues describing a potential bug that has not yet been shown repeatable by a core developer. Group 4 - Data Importing Any issue relating to importing of biological data into either Chado or any other database.
#1569 opened Jul 5, 2023 by laceysanderson
1
REVEAL: Smaller Bug Fixes / Changes Group 0 - Maintenance | Docker | Misc Any issue that doesn't fit into the other groups (i.e. docker, github actions)
#1567 opened Jul 5, 2023 by laceysanderson
REVEAL: Fixes to the Content Terms creation Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1566 opened Jul 5, 2023 by laceysanderson
Test Directory Structure Group 9 - Automated Testing Any issue related to automated testing including needed test cases, concerns, etc.
#1539 opened Jun 7, 2023 by laceysanderson
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