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Issues list

Tripal 4 Fields -upgrading core fields Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1414 opened Feb 6, 2023 by laceysanderson
12 of 13 tasks
1
16
Default Term Definition for TripalTermManager Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#1337 opened Aug 30, 2021 by laceysanderson
Integration of Tripal BioDB task system with Tripal Jobs Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views Group 3 - Job Management Any issue relating to long running processes including Tripal Jobs, Tripal Daemon, etc. PMC - Discussion Discussions requiring input from the project management committee (PMC) Priority - Medium Any issue/PR which has a minor impact on system usability or is not often encountered.
#1340 opened Feb 25, 2022 by laceysanderson
@guignonv
1
Deprecate existing Chado Query API in favour of new BioDB API Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#1341 opened Feb 25, 2022 by laceysanderson
7
Deprecate existing ChadoRecord + ChadoSchema classes in favour of Tripal BioDB Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#1342 opened Feb 25, 2022 by laceysanderson
3
Permissions need more testing and confirmation Group 0 - Maintenance | Docker | Misc Any issue that doesn't fit into the other groups (i.e. docker, github actions)
#1385 opened Aug 26, 2022 by laceysanderson
@laceysanderson
2
Make Tripal Content Permissions Dynamic (i.e. per Type) Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1355 opened Aug 29, 2022 by laceysanderson
1
When to throw Exceptions vs. log using TripalLogger Community - Discussion Any issue focused on discussion from the community. It does not apply to enhancements. Group 0 - Maintenance | Docker | Misc Any issue that doesn't fit into the other groups (i.e. docker, github actions)
#1361 opened Oct 14, 2022 by laceysanderson
3
Check that Tripal 4 GFF3 importer incorporates Tripal 3 updates Group 4 - Data Importing Any issue relating to importing of biological data into either Chado or any other database.
#1332 opened Dec 7, 2022 by laceysanderson
@risharde
2
Datetime Fields Showing Wrong Date bug - potential For issues describing a potential bug that has not yet been shown repeatable by a core developer. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1333 opened Dec 7, 2022 by laceysanderson
Remove database connections saved as properties from BioTask base class. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#1376 opened Dec 23, 2022 by laceysanderson
Tripal Content Auto Title -need functionality to update all titles Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1382 opened Jan 13, 2023 by laceysanderson 4.0-alpha3
Registrations: Tripal 4 vs. 3 cannot be told appart bug - confirmed For issues where a core developer has confirmed a bug exists. Group 0 - Maintenance | Docker | Misc Any issue that doesn't fit into the other groups (i.e. docker, github actions)
#1329 opened Apr 6, 2020 by laceysanderson
3
Tripal Field for Organism Scientific Name Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1384 opened Jan 13, 2023 by laceysanderson
1
Vocab/IDSpace/Term support for borrowed terms Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1421 opened Feb 15, 2023 by laceysanderson
1
Remove use of \Drupal from Class settings in favour of dependency injection Group 0 - Maintenance | Docker | Misc Any issue that doesn't fit into the other groups (i.e. docker, github actions)
#1522 opened May 23, 2023 by laceysanderson
3 of 8 tasks
2
Test Directory Structure Group 9 - Automated Testing Any issue related to automated testing including needed test cases, concerns, etc.
#1539 opened Jun 7, 2023 by laceysanderson
REVEAL: Fixes to the Content Terms creation Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1566 opened Jul 5, 2023 by laceysanderson
REVEAL: Smaller Bug Fixes / Changes Group 0 - Maintenance | Docker | Misc Any issue that doesn't fit into the other groups (i.e. docker, github actions)
#1567 opened Jul 5, 2023 by laceysanderson
OBO Importer: Cannot find term: 'NCIT:C25693' when importing into 2nd chado schema bug - potential For issues describing a potential bug that has not yet been shown repeatable by a core developer. Group 4 - Data Importing Any issue relating to importing of biological data into either Chado or any other database.
#1569 opened Jul 5, 2023 by laceysanderson
1
Create test for ChadoOrganismDefault Field Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 9 - Automated Testing Any issue related to automated testing including needed test cases, concerns, etc.
#1587 opened Jul 24, 2023 by laceysanderson
Fix Placeholder setting in fields that's not set-able Good First Issue Any issue that is appropriate for a new contributor to try addressing. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1600 opened Aug 10, 2023 by laceysanderson
1
Drush command to create Chado Fields. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields.
#1606 opened Aug 14, 2023 by laceysanderson
1
Move function-focused legacy API into a separate core submodule Group 0 - Maintenance | Docker | Misc Any issue that doesn't fit into the other groups (i.e. docker, github actions)
#1646 opened Sep 22, 2023 by laceysanderson 4.0-alpha3
@laceysanderson
2
Clean-up property type variables in the ChadoPublish class. Group 1 - Tripal Content Types | Terms | Fields Any issue relating to Tripal Content including types, terms, and fields. Group 2 - Data Storage | Tripal DBX | Chado Any issue relating to biological data storage, Tripal DBX and Chado integration, Materialized Views
#2149 opened Mar 7, 2025 by laceysanderson
ProTip! Adding no:label will show everything without a label.