Aligns short reads using dynamic seed size with strobemers
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Oct 13, 2026 - C++
#
short-read-mapping
Here are 7 public repositories matching this topic...
BWA-MEME: Faster BWA-MEM2 using learned-index
machine-learning bioinformatics genomics ngs bwa-mem alignment-algorithm learned-index bwa-mem2 short-read-mapping bwa-meme
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Jun 3, 2026 - C++
Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.
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Apr 23, 2024 - C++
This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.
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Oct 30, 2023 - Python
Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)
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Nov 15, 2024 - C
A reproducible, HPC-based whole genome sequencing pipeline for germline variant calling and filtering variants from raw seq reads, alignment, quality filtering, and annotation
bioinformatics annotation genomics variant-calling chicken wgs vep genome-assembly whole-genome-sequencing qc variant-filtration snp-analysis gatk4 gatk-bestpractices short-read-mapping gatk4-haplotypecaller short-read-sequencing variant-calling-and-annotation gatk-based-variant-calling
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Aug 21, 2026 - Shell
Whisper 2: indel-sensitive short read mapping. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000376
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Apr 14, 2021 - C++
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