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Pull requests: ksahlin/strobealign

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Pull requests list

Add a --trace command-line option
#508 opened Jul 2, 2025 by marcelm Loading…
1
Chaining
#504 opened Jun 4, 2025 by NicolasBuchin Loading…
4 tasks done
22
Non-canonical syncmers and randstrobes
#474 opened Dec 19, 2024 by marcelm • Draft
4 tasks
1
Experiment: Use a bit in RefRandstrobe to indicate whether it is filtered
#466 opened Dec 4, 2024 by marcelm Loading…
3
Experiment: Fast path for exact matches
#461 opened Nov 26, 2024 by marcelm • Draft
2
Use optimized parameters according to optimization in issue #423
#453 opened Oct 7, 2024 by marcelm • Draft
1 task
1
Add syncmers at ends of reads
#452 opened Oct 7, 2024 by marcelm • Draft
2 tasks
4
Experiment: Asymmetric randstrobe hashes
#405 opened Mar 6, 2024 by marcelm • Draft
6
Use ksw2 to align soft-clipped ends from ungapped alignment
#382 opened Dec 17, 2023 by marcelm Loading…
1
7
Format the codebase with clang-format
#266 opened Apr 26, 2023 by marcelm Loading…
3 of 5 tasks
Alignment with ksw2/WFA2 - Take 2
#251 opened Mar 6, 2023 by marcelm Loading…
2 of 3 tasks
6
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