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pathway-abundance

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Qasim-Hussain-Code / metaphlan4_humann3_microbiome_pipeline

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Metagenomic functional profiling pipeline for reconstructing metabolic pathway abundances and gene families from shotgun sequencing reads. Automates marker-based taxonomic profiling and translated search to quantify community-wide metabolic potential and taxonomically attribute metabolic functions.

bioinformatics metagenomics microbiome metabolic-reconstruction metacyc biobakery functional-profiling humann3 metaphlan4 shotgun-sequencing uniref90 pathway-abundance taxonomic-attribution
  • Updated Jul 5, 2026
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