Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add PW-RBSC-cor_6th-ed #43

Merged
merged 15 commits into from
Apr 25, 2024

Conversation

UlrikeS91
Copy link
Contributor

After several discussion with both @lzehl and @aeidi89, I manage to populate the content for Paxinos and Watson's 6th edition of their atlas. Since it's actually 3 atlases in one book (one for each anatomical plane) and they did not define a negative axis for the mediolateral axis (positive values in both directions), this is only the PR for the coronal atlas and includes 4 different CCSVs and corrsponding BAVs (2 different origins and left & right oriented because of the poorly defined mediolateral axis).

I also made a repository with an overview, the script and the input files here: https://github.com/UlrikeS91/AtlasIntegration-into-openMINDS/tree/main/PaxinosWatson-RBSC.

As for the PR for Swanson, @aeidi89 could you please review the content one last time and @lzehl could you please review the rest?

Found a few typos and syntax was wrong for single linked instances
"@id": "https://openminds.ebrains.eu/instances/commonCoordinateSpaceVersion/PW-RBSC-corT_v2004-Bregma-left",
"@type": "https://openminds.ebrains.eu/core/CommonCoordinateSpaceVersion",
"abbreviation": "PW-RBSC-corT",
"accessibilty": {
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

GitHub Actions flagged this one as a spelling error

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

jup...should be "accessibility" (last i is missing...)

"@id": "https://openminds.ebrains.eu/instances/commonCoordinateSpaceVersion/PW-RBSC-corT_v2004-Bregma-right",
"@type": "https://openminds.ebrains.eu/core/CommonCoordinateSpaceVersion",
"abbreviation": "PW-RBSC-corT",
"accessibilty": {
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Spelling error?

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thanks! I corrected them now 🙂

"@id": "https://openminds.ebrains.eu/instances/commonCoordinateSpaceVersion/PW-RBSC-corT_v2004-Interaural-left",
"@type": "https://openminds.ebrains.eu/core/CommonCoordinateSpaceVersion",
"abbreviation": "PW-RBSC-corT",
"accessibilty": {
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Spelling error?

"@id": "https://openminds.ebrains.eu/instances/commonCoordinateSpaceVersion/PW-RBSC-corT_v2004-Interaural-right",
"@type": "https://openminds.ebrains.eu/core/CommonCoordinateSpaceVersion",
"abbreviation": "PW-RBSC-corT",
"accessibilty": {
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Spelling error?

Copy link

@aeidi89 aeidi89 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I have had a brief look at some of the instances and they seem fine with me. The changes we discussed have been implemented. Github flagged som spellinge error which seems to be relevant, they have been marked with comments.

Otherwise, great work!

@UlrikeS91
Copy link
Contributor Author

We found that my script introduced a typo in the type (instead of "sands", the path had "core"). The last commits fixed this.

Change left and right in the version ID (and therefore also in the at_id and lookup label), to the 3-letter abbreviation for the anatomical axes orientation e.g. v2004 (Bregma, right) changed into v2004 (Bregma, RIA)
Copy link
Member

@lzehl lzehl left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

looks good to me. ISBN can be changed later if we make a decision on how to write this best.

@lzehl lzehl merged commit ee592fd into openMetadataInitiative:main Apr 25, 2024
1 check passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants