Added PEV instances for RBSC PW v6

[ehennestad]

No description provided.

[aeidi89]

@lzehl
Does the order of the metadata in the schema matter?
E.g. "alternateName" is the 5th metadata in the schema, could it be placed at the end of the schema?

[lzehl]

@aeidi89 properties and value lists should be ordered alphabetically

[aeidi89]

@aeidi89 properties and value lists should be ordered alphabetically

Thank you @lzehl

@ehennestad could you please rearrange the properties and values so they are listed alphabetically?

[matsalan]

Hi, i have rearranged the properties and values so they are listed alphabetically, could you give me permission to push the changes?

[aeidi89]

Hi, i have rearranged the properties and values so they are listed alphabetically, could you give me permission to push the changes?

@lzehl is this possible?

[lzehl]

@matsalan thank you for correcting the alphabetical order of the properties in the JSONLD files. However now all the JSONLDs are missing the newline character at the end of each file (POSIX standard) and the indent should be corrected to two spaces per tab.

General question: What is RBSC PW v6 ? I would suggest to also register the respective Brain Atlas Version already with at least minimal information.

[matsalan]

It should be corrected now @lzehl.

[lzehl]

@matsalan I'm sorry but the files still miss the newline character at the end. I also still don't know the meaning for "RBSC PW v6" depending on this the lookup labels / atids may need correction as well

[lzehl]

@matsalan if you work in Python you have to add the newline character explicitely (for some reason python ignores so far the POSIX standard

[matsalan]

Is the line suppose to end with \n?

[lzehl]

@matsalan yes each json needs to end with \n

[matsalan]

Ah, but just at the bottom, not every single line right? @lzehl

[lzehl]

At the bottom. Here the way to do this via python when saving the json

with open('FILENAME.jsonld', 'a') as outfile:
    for hostDict in ....:
        json.dump(hostDict, outfile)
        outfile.write('\n') #important part rest can be different in your case

[matsalan]

Okay, was that done correctly? @lzehl

[lzehl]

@matsalan yepp 👍 thanks.

Now to the naming convention:
"RBSC PW v6" apparently stands for "Rat Brain Stereotaxic Paxinos Watson version 6" (@aeidi89 thanks 🙂)
I'm wondering though if the full name would not rather be "Paxinos and Watson's The Rat Brain in Stereotaxic Coordinates". And respectively the short name "Paxinos and Watson's Rat Brain" and the abbreviation "PW-RatBrain" or "PW-RBSC" or "PWRBSC".

Unless "RBSC PW" is an official abbreviation already in use by the community.

Depending on this we should further correct the filenames, the "@id" and the "lookupLabel" of the PEVs

[lzehl]

@aeidi89 could we create please with this PR as well the instance for the Brain Atlas Version (with minimum metadata informations) already?

[aeidi89]

@lzehl
Yes, we should create the Brain Atlas Version
I will have a look at doing that this week

[UlrikeS91]

I will close the PR for several reasons:

1. instances have been combined into one repo https://github.com/openMetadataInitiative/openMINDS_instances/ and no more instances are added in the SANDS repo
2. I found errors in some of the file names of this PR
3. I want to remove all information about annotations since this is a copyright protected atlas. I don't think we would get in trouble for stating that the annotations have been made on both hemispheres, but I just do not want to mention anything related to annotations to be on the save side.
4. All other components of the atlas are missing (BA, BAV, CCS, CCSV and PEs).

Therefore, I have started this from scratch and made a PR in the instance repo: openMetadataInitiative/openMINDS_instances#43