Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

UBERON terms with 'layer' in their name #207

Open
wants to merge 1 commit into
base: main
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
The table of contents is too big for display.
Diff view
Diff view
  •  
  •  
  •  
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/HenlesFiberLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is a nervous system cell part layer. Is part of the retina. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_8000005) ('is_a' and 'relationship')]",
"description": "This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_8000005)]",
"interlexIdentifier": null,
"knowledgeSpaceLink": null,
"name": "Henle's fiber layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_8000005",
"synonym": [
"Henle fiber layer",
"HFL",
"nerve fiber layer of Henle"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/PurkinjeCellLayerCorpusCerebelli",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is part of the corpus cerebelli. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2002240)]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2002240#purkinje-cell-layer-corpus-cerebelli",
"name": "Purkinje cell layer corpus cerebelli",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2002240",
"synonym": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/PurkinjeCellLayerOfCerebellarCortex",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is a cerebellar layer. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002979)]",
"description": "The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002979)]",
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002979#purkinje-cell-layer-of-cerebellar-cortex-1",
"name": "Purkinje cell layer of cerebellar cortex",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002979",
"synonym": [
"cerebellar Purkinje cell layer",
"cerebellum Purkinje cell layer",
"cerebellum Purkinje layer",
"Purkinje cell layer"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/PurkinjeCellLayerValvulaCerebelli",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is part of the valvula cerebelli. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2002241)]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2002241#purkinje-cell-layer-valvula-cerebelli",
"name": "Purkinje cell layer valvula cerebelli",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2002241",
"synonym": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/accessoryOlfactoryBulbExternalPlexiformLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is an olfactory bulb layer. Is part of the accessory olfactory bulb. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019289) ('is_a' and 'relationship')]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019289#accessory-olfactory-bulb-external-plexiform-layer",
"name": "accessory olfactory bulb external plexiform layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019289",
"synonym": [
"AOB, outer plexiform layer"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/accessoryOlfactoryBulbGlomerularLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is a central nervous system cell part cluster. Is part of the accessory olfactory bulb. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007631) ('is_a' and 'relationship')]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007631#accessory-olfactory-bulb-glomerular-layer",
"name": "accessory olfactory bulb glomerular layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007631",
"synonym": [
"accessory olfactory bulb, glomerular layer",
"AOB, glomerular layer"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/accessoryOlfactoryBulbGranuleCellLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is an olfactory bulb layer. Is part of the accessory olfactory bulb and the olfactory bulb granule cell layer. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015244) ('is_a' and 'relationship')]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015244#accessory-olfactory-bulb-granule-cell-layer",
"name": "accessory olfactory bulb granule cell layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015244",
"synonym": [
"accessory olfactory bulb, granular layer",
"AOB, granular layer"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/accessoryOlfactoryBulbInternalPlexiformLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is an olfactory bulb layer. Is part of the accessory olfactory bulb. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019290) ('is_a' and 'relationship')]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019290#accessory-olfactory-bulb-internal-plexiform-layer",
"name": "accessory olfactory bulb internal plexiform layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019290",
"synonym": [
"AOB, internal plexiform layer"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/accessoryOlfactoryBulbMitralCellLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is an olfactory bulb layer. Is part of the accessory olfactory bulb and the olfactory bulb mitral cell layer. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015432) ('is_a' and 'relationship')]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015432#accessory-olfactory-bulb-mitral-cell-layer",
"name": "accessory olfactory bulb mitral cell layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015432",
"synonym": [
"accessory olfactory bulb, mitral layer"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/anterolateralVisualAreaLayer5",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is a regional part of brain. Is part of the anterolateral visual area. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035908) ('is_a' and 'relationship')]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035908#anterolateral-visual-area-layer-5",
"name": "anterolateral visual area, layer 5",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035908",
"synonym": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/anteromedialVisualAreaLayer5",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is a regional part of brain. Is part of the anteromedial visual area. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035913) ('is_a' and 'relationship')]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035913#anteromedial-visual-area-layer-5",
"name": "anteromedial visual area, layer 5",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035913",
"synonym": null
}

Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,18 @@
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/cerebellarLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "'Cerebellar layer' is a central nervous system cell part cluster and central nervous system gray matter layer. It is part of the cerebellar cortex.",
"description": "A cortical cell layer of the cerebellum. Examples: the granular (inner+outer) layer, molecular layer, Purkinje cell layer, and the ventricular layer of the embryo.",
"definition": "Is a central nervous system cell part cluster and central nervous system gray matter layer. Is part of the cerebellar cortex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004130) ('is_a' and 'relationship')]",
"description": "A cortical cell layer of the cerebellum. Examples: the granular (inner+outer) layer, molecular layer, Purkinje cell layer, and the ventricular layer of the embryo. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004130)]",
"interlexIdentifier": "http://uri.interlex.org/base/ilx_0732371",
"knowledgeSpaceLink": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004130#cytoarchitectural-part-of-the-cerebellar-cortex",
"name": "cerebellar layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004130",
"synonym": null
"synonym": [
"cell layer of cerebellar cortex",
"cytoarchitectural part of the cerebellar cortex",
"gray matter layer of cerebellum",
"layer of cerebellar cortex",
"layer of cerebellum"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/cerebellumExternalGranuleCellLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is a granular layer of cerebellar cortex. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008829)]",
"description": "Transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008829)]",
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008829#outer-granular-layer-of-cerebellar-cortex",
"name": "cerebellum external granule cell layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008829",
"synonym": [
"outer granular layer of cerebellar cortex"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/cerebellumInternalGranuleCellLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is a granular layer of cerebellar cortex. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008830)]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008830#inner-granular-layer-of-cerebellar-cortex",
"name": "cerebellum internal granule cell layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008830",
"synonym": [
"inner granular layer of cerebellar cortex"
]
}

Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,14 @@
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/cerebellumMarginalLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "'Cerebellum marginal layer' is a hindbrain marginal layer. It is part of the cerebellum.",
"definition": "Is a hindbrain marginal layer. Is part of the cerebellum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034708) ('is_a' and 'relationship')]",
"description": null,
"interlexIdentifier": "http://uri.interlex.org/base/ilx_0734731",
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034708#cerebellum-marginal-layer",
"name": "cerebellum marginal layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034708",
"synonym": null
"synonym": [
"marginal zone of cerebellum"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/cerebellumVentricularLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is a cerebellar layer. Is part of the ventricular system of central nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015828) ('is_a' and 'relationship')]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015828#cerebellum-ventricular-layer",
"name": "cerebellum ventricular layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015828",
"synonym": null
}

Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,16 @@
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/cerebralCortexMarginalLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "'Cerebral cortex marginal layer' is a layer of developing cerebral cortex. It is part of the brain marginal zone.",
"description": "Developing superficial cortical layer located just under the pia matter, develops from the marginal layer of the neural tube and becomes cortical layer I.",
"definition": "Is a layer of developing cerebral cortex. Is part of the brain marginal zone. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014935) ('is_a' and 'relationship')]",
"description": "Developing superficial cortical layer located just under the pia matter, develops from the marginal layer of the neural tube and becomes cortical layer I. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014935)]",
"interlexIdentifier": "http://uri.interlex.org/base/ilx_0726687",
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014935#cerebral-cortex-marginal-layer",
"name": "cerebral cortex marginal layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014935",
"synonym": null
"synonym": [
"cortical marginal layer",
"cortical marginal zone",
"future cortical layer I"
]
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
{
"@context": {
"@vocab": "https://openminds.om-i.org/props/"
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/cerebralCortexVentricularLayer",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "Is a layer of developing cerebral cortex. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014936)]",
"description": null,
"interlexIdentifier": null,
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014936#cerebral-cortex-ventricular-layer",
"name": "cerebral cortex ventricular layer",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014936",
"synonym": null
}

Original file line number Diff line number Diff line change
Expand Up @@ -4,31 +4,26 @@
},
"@id": "https://openminds.om-i.org/instances/UBERONParcellation/corticalLayerI",
"@type": "https://openminds.om-i.org/types/UBERONParcellation",
"definition": "The most superficial layer of the neocortex characterized by a paucity of cell bodies.",
"description": null,
"definition": "Is a layer of neocortex. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005390)]",
"description": "The most superficial layer of the neocortex characterized by a paucity of cell bodies. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005390)]",
"interlexIdentifier": "http://uri.interlex.org/base/ilx_0107367",
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005390#neocortex-layer-1",
"knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005390#cortical-layer-i",
"name": "cortical layer I",
"preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005390",
"synonym": [
"cortical layer 1",
"lamina 1",
"lamina I",
"lamina molecularis isocorticis",
"layer 1",
"cerebral cortex, layer 1",
"lamina molecularis isocorticis [lamina I]",
"layer 1 of neocortex",
"layer I",
"layer i",
"layer I of neocortex",
"molecular layer of cerebral cortex",
"molecular layer of isocortex",
"molecular layer of isocortex [layer i]",
"molecular layer of neocortex",
"molecular layer of neocortex",
"neocortex layer 1",
"neocortex layer I",
"neocortex molecular layer",
"neocortex plexiform layer",
"neocortical layer 1",
"neocortical layer I",
"plexiform layer of neocortex"
]
}

Loading
Loading