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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 248 57

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 51 5

  3. MAxO MAxO Public

    Medical action ontology

    HTML 55 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 16 3

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 23 7

Repositories

Showing 10 of 253 repositories
  • aurelian Public

    A motley crew of agents developed by the Monarch Initiative

    monarch-initiative/aurelian’s past year of commit activity
    Python 7 MIT 1 13 1 Updated Apr 5, 2025
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 69 5 Updated Apr 4, 2025
  • ontotools-docker Public Forked from EBISPOT/ontotools-docker

    Configuration to deploy ontotools using docker compose

    monarch-initiative/ontotools-docker’s past year of commit activity
    TypeScript 1 Apache-2.0 10 3 0 Updated Apr 4, 2025
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 23 BSD-3-Clause 7 236 (3 issues need help) 16 Updated Apr 4, 2025
  • monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    monarch-initiative/monarch-ingest’s past year of commit activity
    Python 16 3 34 5 Updated Apr 4, 2025
  • curategpt Public

    LLM-driven curation assist tool

    monarch-initiative/curategpt’s past year of commit activity
    Jupyter Notebook 82 BSD-3-Clause 13 31 6 Updated Apr 4, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 248 CC-BY-4.0 57 388 (2 issues need help) 53 Updated Apr 4, 2025
  • pheval Public

    A framework for empirical evaluation of phenotype matching and prioritisation

    monarch-initiative/pheval’s past year of commit activity
    Python 12 Apache-2.0 3 28 3 Updated Apr 4, 2025
  • go-ingest Public

    gene ontology ingest from gene association formatted files

    monarch-initiative/go-ingest’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 3, 2025
  • clinvar-ingest Public
    monarch-initiative/clinvar-ingest’s past year of commit activity
    Python 3 MIT 0 1 0 Updated Apr 3, 2025
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