Merge branch 'dev' into 'main' - v1.0.1

docs/tutorials/index.md

@@ -0,0 +1,7 @@
+[![Melbourne Bioinformatics Logo](../img/melbioinf_logo.png)](https://www.melbournebioinformatics.org.au/)
+
+# Welcome to MBITE!
+
+MBITE stands for <u>**M**</u>elbourne <u>**BI**</u>oinformatics <u>**T**</u>raining and <u>**E**</u>ducation. These tutorials have been developed by bioinformaticians at MB, where they are regularly delivered as in-house or online workshops. They are also designed to be used for self-directed learning. Many of the training materials were developed for use on Galaxy Australia, enabling learners to easily transition from learning to doing their own data analysis.
+
+To get updates about or attend our workshops, check out our [Melbourne Bioinformatics Eventbrite page](https://www.eventbrite.com.au/o/melbourne-bioinformatics-13058846490).

mkdocs.yml

@@ -1,8 +1,8 @@
 
 site_name: MBITE Tutorials
 
-repo_name: melbournebioinformatics/MelBioInf_docs
-repo_url: https://github.com/melbournebioinformatics/MelBioInf_docs
+repo_name: melbournebioinformatics/melbournebioinformatics.github.io
+repo_url: https://github.com/melbournebioinformatics/melbournebioinformatics.github.io
 
 # Comment below - old universal analytics tracking. No longer used.
 # google_analytics: ['UA-21794901-5', 'www.melbournebioinformatics.org.au/tutorials/']
@@ -41,7 +41,7 @@ extra_javascript:
 copyright: <a href="https://www.melbournebioinformatics.org.au/">Melbourne Bioinformatics – The University of Melbourne ©</a>
 
 nav:
-    - Home: 'index.md'
+    - Home: 'tutorials/index.md'
     - 'Popular':
         - 'Git for Researchers': 'https://melbournebioinformatics.github.io/intro-to-git/'
         - 'Intro to the Nectar Cloud': 'https://melbournebioinformatics.github.io/nectar-instances/'

overrides/checklist_2.html

@@ -220,14 +220,9 @@ <h3>Common issues</h3>
 <br><br>
 
 <!-- ========================================================= -->
-<!-- FAQ (unchanged except formatting) -->
+<!-- FAQ (removed) -->
 <!-- ========================================================= -->
 
-<h2>Frequently Asked Questions</h2>
 
-<ul class="accordion">
-  <!-- your accordion content stays the same -->
-  {{ accordion_html|safe }}
-</ul>
 
 {% endblock %}

overrides/header_footer.html

@@ -33,7 +33,7 @@
     <div data-um-mega-menu='
 {
   "facultyName": "Melbourne Bioinformatics Training and Education (MBITE)",
-  "facultyHref": "https://mbite.mdhs.unimelb.edu.au/",
+  "facultyHref": "https://mbite.org/",
   "external": false,
   "alt": "Melbourne Bioinformatics",
   "src": "img/melbioinf_logo.png",

overrides/policy.html

@@ -51,7 +51,7 @@ <h3>2.3 De-prioritisation Process</h3>
 
 
 <h2>3. Cancellation Policy</h2>
-To avoid being marked as a no-show:
+<p>To avoid being marked as a no-show:</p>
 
 <ul>
   <li>Participants must cancel their registration at least 48 hours before the workshop start time.</li>

overrides/training-materials.html

@@ -408,6 +408,26 @@ <h2>Transcriptomics</h2>
   </div>
 </div>
 
+<hr>
+<div class="filtered-listing-section clearfix" data-section="proteomics">
+  <div class="aside">
+    <h2>Proteomics</h2>
+    <p>
+      Tutorials for analysing proteomic data
+    </p>
+  </div>
+  <div class="bside">
+    <ul class="filtered-listing-grid">
+      <li class="filtered-listing-item" data-tag="r">
+        <a href="https://mbite.org/intro-to-proteomics/">
+          R
+          <strong>Introduction to Proteomics</strong>
+        </a>
+      </li>
+    </ul>
+  </div>
+</div>
+
 
 <hr>
 <div class="filtered-listing-section clearfix" data-section="statistics-visualisation">

overrides/training-program.html

@@ -157,37 +157,37 @@ <h2>Timeline of Program</h2>
     <dt><strong>June</strong></dt>
   <dd>
     <p>
-      Placeholder
+      Facilitation of workshops
     </p>
   </dd>
       <dt><strong>July</strong></dt>
   <dd>
     <p>
-      Placeholder
+      Continued training in workshop development and draft proposals
     </p>
   </dd>
       <dt><strong>August</strong></dt>
   <dd>
     <p>
-      Placeholder
+      Additional facilitation and workshop development
     </p>
   </dd>
       <dt><strong>September</strong></dt>
   <dd>
     <p>
-      Placeholder
+      Training activities and workshop development
     </p>
   </dd>
       <dt><strong>October</strong></dt>
   <dd>
     <p>
-      Placeholder
+      Finalisation of student-led workshops
     </p>
   </dd>
       <dt><strong>November</strong></dt>
   <dd>
     <p>
-      Placeholder
+      Workshops take place
     </p>
   </dd>
       <dt><strong>December</strong></dt>