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Feature: MACS3 Call variants #426

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merged 19 commits into from
Dec 6, 2020
Merged

Feature: MACS3 Call variants #426

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2d9cbd5
enable testing for all push and PR
taoliu Dec 4, 2020
6e0332b
callvar function introduced in MACS3
taoliu Dec 5, 2020
b79082b
it seems zlib is missing in some docker images
taoliu Dec 5, 2020
af7bd8b
reorganize source codes
taoliu Dec 5, 2020
a22d72c
add examples for callvar command
taoliu Dec 5, 2020
13c656c
test callvar in cmdline (not checking the correct answer)
taoliu Dec 5, 2020
9c5ba8f
add libc-dev to non-x86 test
taoliu Dec 5, 2020
0f86f1f
fermi-lite can't work under non-SSE2 archs, so skip other tests
taoliu Dec 5, 2020
63c476f
add simde
taoliu Dec 5, 2020
ce62fcc
adjust path
taoliu Dec 5, 2020
ca1daf5
use simde for fermi-lite to use sse2 intrinsics
taoliu Dec 5, 2020
7d7fb15
use simde for fermi-lite to use sse2 intrinsics
taoliu Dec 5, 2020
d70e8c1
put back non-x64 test
taoliu Dec 5, 2020
4ae9076
modify setup.py to find simde header files
taoliu Dec 5, 2020
05e74e9
config to checkout submodule
taoliu Dec 5, 2020
0ec8649
recursive checkout submodules
taoliu Dec 5, 2020
8a358f8
checkout submodule simde
taoliu Dec 5, 2020
7e8885f
update documents
taoliu Dec 5, 2020
5aedab9
update README
taoliu Dec 5, 2020
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10 changes: 4 additions & 6 deletions .github/workflows/build-and-test-MACS3-non-x64.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,11 +3,7 @@

name: CI non x64, python 3.7

on:
push:
branches: [ feat-macs3* ]
pull_request:
branches: [ feat-macs3* ]
on: [push, pull_request]

jobs:
build_job:
Expand All @@ -27,6 +23,8 @@ jobs:
steps:
- name: Checkout MACS
uses: actions/[email protected]
with:
submodules: 'true'
- name: Set up arch and run
uses: uraimo/[email protected]
id: build
Expand Down Expand Up @@ -57,7 +55,7 @@ jobs:
chown -R macs3:macs3 /MACS3
# install dependencies
apt-get update -qq -y
apt-get install -yq python3 python3-pip python3-setuptools python3-wheel procps
apt-get install -yq python3 python3-pip python3-setuptools python3-wheel procps zlib1g zlib1g-dev
run: |
echo `uname -a`
cd /home/macs3/
Expand Down
10 changes: 3 additions & 7 deletions .github/workflows/build-and-test-MACS3-x64.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,11 +3,7 @@

name: CI x64

on:
push:
branches: [ feat-macs3* ]
pull_request:
branches: [ feat-macs3* ]
on: [push, pull_request]

jobs:
build:
Expand All @@ -20,6 +16,8 @@ jobs:
steps:
- name: Checkout MACS
uses: actions/checkout@v2
with:
submodules: 'true'
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
Expand Down Expand Up @@ -61,5 +59,3 @@ jobs:
path: |
dist/*.tar.gz



2 changes: 0 additions & 2 deletions .gitignore
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Expand Up @@ -56,8 +56,6 @@ dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
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3 changes: 3 additions & 0 deletions .gitmodules
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Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
[submodule "MACS3/fermi-lite/lib"]
path = MACS3/fermi-lite/lib
url = https://github.com/simd-everywhere/simde/
10 changes: 0 additions & 10 deletions DOCKER/Dockerfile
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16 changes: 0 additions & 16 deletions DOCKER/Dockerfile-slim
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37 changes: 0 additions & 37 deletions DOCKER/README.md
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