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A new track class: sashimiBigWig #489

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aeb154f
add sashimiBigWig
Zepeng-Mu Oct 9, 2020
3729b19
add note
Zepeng-Mu Oct 10, 2020
62fa792
add line_width
Zepeng-Mu Nov 1, 2020
812a5ae
add scale_line_width
Zepeng-Mu Nov 3, 2020
582ae1f
Merge branch 'master' of https://github.com/Zepeng-Mu/pyGenomeTracks
Zepeng-Mu Nov 3, 2020
40b0720
change readme
Zepeng-Mu Jan 26, 2021
1a2b0f1
Merge remote-tracking branch 'upstream/master'
Zepeng-Mu Jan 26, 2021
f9b55be
add example
Zepeng-Mu Feb 11, 2021
38995d8
add plot
Zepeng-Mu Feb 11, 2021
ff38f3c
change typo
Zepeng-Mu Feb 11, 2021
2d13d09
add show_number
Zepeng-Mu Aug 20, 2021
0c19299
change typo
Zepeng-Mu Aug 20, 2021
613a6bd
add support for log operation
Zepeng-Mu Jul 7, 2022
80f4cf9
update README
Zepeng-Mu Jul 7, 2022
97cd7cc
fix typo
Zepeng-Mu Jul 7, 2022
b94ee4e
fix typo
Zepeng-Mu Nov 18, 2022
cfcb2b7
Merge remote-tracking branch 'upstream/master' into pgt3.7
Zepeng-Mu Nov 18, 2022
50de446
pgt3.7 compatible
Zepeng-Mu Nov 19, 2022
b6adee3
update
Zepeng-Mu Nov 19, 2022
457ee27
add new example
Zepeng-Mu Jul 6, 2023
35366c7
Merge commit '457ee278dc44101f3b8a2e13d01f11ffee3533b1'
Zepeng-Mu Jul 6, 2023
1448c8e
change readme
Zepeng-Mu Jul 6, 2023
89c9ee7
auto height for links
Zepeng-Mu Jul 20, 2023
c41137d
Merge remote-tracking branch 'upstream/master'
Zepeng-Mu Jul 21, 2023
706f129
small changes
Zepeng-Mu Aug 2, 2023
3bb01f7
smarter link width and height
Zepeng-Mu Aug 3, 2023
aa2ea50
specific python version
Zepeng-Mu Aug 6, 2023
6ecc75b
Merge branch 'master' of https://github.com/deeptools/pyGenomeTracks
Zepeng-Mu Dec 20, 2024
958d82c
change example
Zepeng-Mu Jan 1, 2025
5e02adb
remove gtf file
Zepeng-Mu Jan 1, 2025
56cd229
update docs
Zepeng-Mu Jan 2, 2025
d2cbd77
change line width scale, update example
Zepeng-Mu Jan 2, 2025
6058d63
prepare PR
Zepeng-Mu Jan 2, 2025
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262 changes: 119 additions & 143 deletions README.md

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67 changes: 67 additions & 0 deletions example_sashimi/chr2-231091223_231109786_231113600.ini
Original file line number Diff line number Diff line change
@@ -0,0 +1,67 @@

[spacer]
height = 0.25

[scale]
title =
height = 0.1
where = right
fontsize = 4
file_type = scalebar

[spacer]
height = 0.25

[avg_chr2-231091223_231109786_231113600_0]
file = avg_chr2-231091223_231109786_231113600_0.bw
link_file = chr2-231091223_231109786_231113600_0.sashimi
title = 0
height = 1
bw_color = darkblue
number_of_bins = 7000
max_value = 110
nans_to_zeros = true
show_data_range = true
link_color = darkblue
fontsize = 4
line_width = 0.5
show_number = true
file_type = sashimiBigWig

[spacer]
height = 0.1

[avg_chr2-231091223_231109786_231113600_1]
file = avg_chr2-231091223_231109786_231113600_1.bw
link_file = chr2-231091223_231109786_231113600_1.sashimi
title = 1
height = 1
bw_color = purple
number_of_bins = 7000
max_value = 110
nans_to_zeros = true
show_data_range = true
link_color = purple
fontsize = 4
scale_line_width = 10
show_number = false
file_type = sashimiBigWig

[spacer]
height = 0.1

[avg_chr2-231091223_231109786_231113600_2]
file = avg_chr2-231091223_231109786_231113600_2.bw
link_file = chr2-231091223_231109786_231113600_2.sashimi
title = 2
height = 1
bw_color = orange
number_of_bins = 7000
max_value = 110
nans_to_zeros = true
show_data_range = true
link_color = orange
fontsize = 4
scale_line_width = 10
show_number = true
file_type = sashimiBigWig
4 changes: 4 additions & 0 deletions example_sashimi/chr2-231091223_231109786_231113600_0.sashimi
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
chr2 231109795 231109795 chr2 231110578 231110578 0.2372970970798
chr2 231109795 231109795 chr2 231112631 231112631 0.023623129827603
chr2 231110655 231110655 chr2 231112631 231112631 0.326657037385783
chr2 231112780 231112780 chr2 231113600 231113600 0.313684195593452
4 changes: 4 additions & 0 deletions example_sashimi/chr2-231091223_231109786_231113600_1.sashimi
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
chr2 231109795 231109795 chr2 231110578 231110578 0.206081805156302
chr2 231109795 231109795 chr2 231112631 231112631 0.0787274425673936
chr2 231110655 231110655 chr2 231112631 231112631 0.283893083093872
chr2 231112780 231112780 chr2 231113600 231113600 0.337251461791404
4 changes: 4 additions & 0 deletions example_sashimi/chr2-231091223_231109786_231113600_2.sashimi
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
chr2 231109795 231109795 chr2 231110578 231110578 0.178226805210714
chr2 231109795 231109795 chr2 231112631 231112631 0.126256827523686
chr2 231110655 231110655 chr2 231112631 231112631 0.195029646753571
chr2 231112780 231112780 chr2 231113600 231113600 0.390030949667857
Binary file added example_sashimi/example.pdf
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Binary file added example_sashimi/example.png
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