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The deepTools ecosystem

deepTools and related packages

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  1. pyGenomeTracks pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    Python 786 115

  2. deepTools deepTools Public

    Tools to process and analyze deep sequencing data.

    Python 693 214

  3. HiCExplorer HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 237 70

  4. pyBigWig pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    C 222 51

  5. HiCBrowser HiCBrowser Public

    Simple web browser to visualize HiC tracks

    JavaScript 18 5

  6. py2bit py2bit Public

    A python library for accessing 2bit files

    C 17 9

Repositories

Showing 10 of 13 repositories
  • deepTools Public

    Tools to process and analyze deep sequencing data.

    deeptools/deepTools’s past year of commit activity
    Python 693 214 137 6 Updated Jan 17, 2025
  • pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    deeptools/pyBigWig’s past year of commit activity
    C 222 MIT 51 12 0 Updated Jan 17, 2025
  • HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    deeptools/HiCExplorer’s past year of commit activity
    Python 237 GPL-3.0 70 131 (1 issue needs help) 0 Updated Dec 2, 2024
  • py2bit Public

    A python library for accessing 2bit files

    deeptools/py2bit’s past year of commit activity
    C 17 MIT 9 2 0 Updated Nov 18, 2024
  • pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    deeptools/pyGenomeTracks’s past year of commit activity
    Python 786 GPL-3.0 115 27 7 Updated Jul 10, 2024
  • HiCMatrix Public
    deeptools/HiCMatrix’s past year of commit activity
    Python 11 GPL-3.0 8 0 0 Updated Apr 30, 2024
  • github-actions Public

    Play around with github actions

    deeptools/github-actions’s past year of commit activity
    JavaScript 0 MIT 1 0 12 Updated Aug 16, 2023
  • Knight-Ruiz-Matrix-balancing-algorithm Public
    deeptools/Knight-Ruiz-Matrix-balancing-algorithm’s past year of commit activity
    C++ 10 5 5 1 Updated Apr 13, 2021
  • HiCBrowser Public

    Simple web browser to visualize HiC tracks

    deeptools/HiCBrowser’s past year of commit activity
    JavaScript 18 GPL-2.0 5 6 2 Updated Dec 12, 2019
  • hicBuildMatrixCpp Public

    C++ implementation of hicBuildMatrix

    deeptools/hicBuildMatrixCpp’s past year of commit activity
    C++ 2 MIT 2 0 0 Updated Oct 16, 2019
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