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Releases: dbmi-bgm/granite

0.1.8

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@B3rse B3rse released this 29 Jan 22:02
ver update

0.1.7

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@B3rse B3rse released this 25 Jan 16:12

Added filter to cleanVCF to drop variants that remain with no VEP annotations after cleaning

0.1.6

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@B3rse B3rse released this 20 Jan 20:05

minor change in matching the header fields to find indexes in VEP like definitions

0.1.5

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@B3rse B3rse released this 12 Jan 17:03
  • added support for gzipped vcf files
  • added methods to write header and variants in a cleaner way to vcf parser

0.1.4

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@B3rse B3rse released this 06 Jan 00:01
  • fixed parsing error due to = in some VEP annotation field

0.1.3

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@B3rse B3rse released this 04 Jan 18:19
  • added geneList
  • updated comHet, whiteList, cleanVCF to work with standard VEP annotation when including ClinVar and SpliceAI DS

0.1.2

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@B3rse B3rse released this 23 Sep 14:11
  • default for VEP tag is now CSQ
  • missing parents in pedigree are ignored
  • updated docs

0.1.1

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@B3rse B3rse released this 01 Sep 20:47
  • added toPED command to convert json pedigree into ped format
  • updated validateVCF

0.1.0

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@B3rse B3rse released this 06 Aug 19:07
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