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Releases: dbmi-bgm/granite

0.5.1

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@B3rse B3rse released this 07 May 14:16
  • Fixed a potential bug in --impact calculation in comHet

0.5.0

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@B3rse B3rse released this 31 Dec 17:05
  • Added filterByTag module
  • Improved handling of flags in INFO field in VCF parser library

0.4.0

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@B3rse B3rse released this 09 Sep 20:07
  • updated Dockerfile
  • added BED support for blackList
  • improved error objects to be more meaningful in the VCF parser
  • added support for flags in VCF INFO field

0.3.0

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@B3rse B3rse released this 05 Jul 19:25
e29b09f

updates to support python up to 3.12

0.2.0

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@B3rse B3rse released this 20 Apr 19:55

updates to support python 3.7+

0.1.13

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@B3rse B3rse released this 27 Aug 15:43

added SV qcVCF

0.1.12

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@B3rse B3rse released this 14 Jun 14:47
  • changed novoCaller to accept PROBAND listed first in triofiles argument
  • changed comHet to automatically get the first three sampleIDs provided in trio if there are more

0.1.11

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@B3rse B3rse released this 31 Mar 20:51
  • minor change in comHet to exclude variant 0/1 in both parents from compound Het calculation

0.1.10

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@B3rse B3rse released this 17 Mar 20:16
b451781
  • added UTF-8 encoding, now forced by vcf_parser
  • reformat pedigree_parser function to read pedigree

0.1.9

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@B3rse B3rse released this 03 Mar 17:08
  • added support for minimal VCF with no samples in vcf_parser
  • extended validateVCF to use different variant types other than SNV