-
-
Notifications
You must be signed in to change notification settings - Fork 5.7k
Add pyvcf to conda-forge #6303
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Merged
Merged
Add pyvcf to conda-forge #6303
Changes from all commits
Commits
Show all changes
2 commits
Select commit
Hold shift + click to select a range
File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,46 @@ | ||
| Copyright (c) 2011-2012, Population Genetics Technologies Ltd, All rights reserved. | ||
|
|
||
| Redistribution and use in source and binary forms, with or without | ||
| modification, are permitted provided that the following conditions are met: | ||
|
|
||
| 1. Redistributions of source code must retain the above copyright notice, this | ||
| list of conditions and the following disclaimer. | ||
|
|
||
| 2. Redistributions in binary form must reproduce the above copyright notice, this | ||
| list of conditions and the following disclaimer in the documentation and/or | ||
| other materials provided with the distribution. | ||
|
|
||
| 3. Neither the name of the Population Genetics Technologies Ltd nor the names of | ||
| its contributors may be used to endorse or promote products derived from this | ||
| software without specific prior written permission. | ||
|
|
||
| THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND | ||
| ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED | ||
| WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE | ||
| DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE | ||
| FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL | ||
| DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR | ||
| SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER | ||
| CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, | ||
| OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE | ||
| OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | ||
|
|
||
|
|
||
| Copyright (c) 2011 John Dougherty | ||
|
|
||
| Permission is hereby granted, free of charge, to any person obtaining a copy of | ||
| this software and associated documentation files (the "Software"), to deal in | ||
| the Software without restriction, including without limitation the rights to | ||
| use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of | ||
| the Software, and to permit persons to whom the Software is furnished to do so, | ||
| subject to the following conditions: | ||
|
|
||
| The above copyright notice and this permission notice shall be included in all | ||
| copies or substantial portions of the Software. | ||
|
|
||
| THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
| IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS | ||
| FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR | ||
| COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER | ||
| IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN | ||
| CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. | ||
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| {% set name = "PyVCF" %} | ||
| {% set version = "0.6.8" %} | ||
|
|
||
| package: | ||
| name: {{ name|lower }} | ||
| version: {{ version }} | ||
|
|
||
| source: | ||
| url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz | ||
| sha256: e9d872513d179d229ab61da47a33f42726e9613784d1cb2bac3f8e2642f6f9d9 | ||
|
|
||
| build: | ||
| # do not use noarch: setup.py use_2to3=true | ||
| number: 0 | ||
| script: python -m pip install --no-deps --ignore-installed . | ||
|
|
||
| requirements: | ||
| host: | ||
| - python | ||
| - pip | ||
| run: | ||
| - python | ||
|
|
||
| test: | ||
| imports: | ||
| - vcf | ||
|
|
||
| about: | ||
| home: https://github.com/jamescasbon/PyVCF | ||
| license: BSD-3-Clause | ||
| license_family: BSD | ||
| license_file: LICENSE | ||
| summary: 'A Variant Call Format (VCF) v4.0 and v4.1 parser for Python.' | ||
|
|
||
| description: | | ||
| The intent of this module is to mimic the csv module in | ||
| the Python stdlib, as opposed to more flexible serialization | ||
| formats like JSON or YAML. vcf will attempt to parse the | ||
| content of each record based on the data types specified in | ||
| the meta-information lines -- specifically the \##INFO and \##FORMAT | ||
| lines. If these lines are missing or incomplete, it will check | ||
| against the reserved types mentioned in the spec. Failing | ||
| that, it will just return strings. | ||
| doc_url: http://pyvcf.readthedocs.io | ||
| dev_url: https://github.com/jamescasbon/PyVCF | ||
|
|
||
| extra: | ||
| recipe-maintainers: | ||
| - acaprez | ||
| - bgruening | ||
| - corburn | ||
| - kyleabeauchamp | ||
| - pvanheus | ||
| - PertuyF | ||
| - sodre |
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Please, remove this file. This is not necessary since the
LICENSEfile is already in the repository and being packageThere was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
It is not. Please see my initial post with a reference to the PR for changing the MANIFEST.in file.
Until then the license file should stay here.