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broadinstitute · Jan 21, 2025 · af8c076 · af8c076
1 parent b7b5c3e
commit af8c076
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/scripts/variantstore/scripts/run_in_hail_cluster.py b/scripts/variantstore/scripts/run_in_hail_cluster.py
@@ -46,6 +46,7 @@ def run_in_cluster(cluster_name, account, worker_machine_type, master_machine_ty
          --num-worker-local-ssds 1 
          --subnet=projects/{gcs_project}/regions/{region}/subnetworks/subnetwork
          --properties=dataproc:dataproc.monitoring.stackdriver.enable=true,dataproc:dataproc.logging.stackdriver.enable=true,core:fs.gs.outputstream.sync.min.interval=5
+         --packages=python-snappy
          {cluster_name}
          
         """)

diff --git a/scripts/variantstore/wdl/GvsUtils.wdl b/scripts/variantstore/wdl/GvsUtils.wdl
@@ -84,7 +84,7 @@ task GetToolVersions {
     # GVS generally uses the smallest `alpine` version of the Google Cloud SDK as it suffices for most tasks, but
     # there are a handlful of tasks that require the larger GNU libc-based `slim`.
     String cloud_sdk_slim_docker = "gcr.io/google.com/cloudsdktool/cloud-sdk:435.0.0-slim"
-    String variants_docker = "us-central1-docker.pkg.dev/broad-dsde-methods/gvs/variants:2025-01-17-alpine-c61e0c5a2109"
+    String variants_docker = "us-central1-docker.pkg.dev/broad-dsde-methods/gvs/variants:2025-01-21-alpine-5b2cfe91fe5a"
     String variants_nirvana_docker = "us.gcr.io/broad-dsde-methods/variantstore:nirvana_2022_10_19"
     String gatk_docker = "us-central1-docker.pkg.dev/broad-dsde-methods/gvs/gatk:2024-11-28-gatkbase-b71132a18899"
     String real_time_genomics_docker = "docker.io/realtimegenomics/rtg-tools:latest"