feat: enhance volcano plot and multipartite graph plotting functions #423
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ggVolcano improvements: - Add xlim parameter for manual x-axis limit control - Add ggrepel.padding parameter (default: 0.1) for label spacing control - Change max.overlaps from 20 to Inf to show all labels without limit - Improve axis scaling for better plot aesthetics: - Y-axis: add 5% top padding (0.05 expansion) - X-axis: symmetric 7% padding on both sides (0.07, 0.07) - Auto-calculate xlim from data range if not specified plotMultiPartiteGraph2 improvements: - Make edge.sign parameter options explicit: "both", "pos", "neg", "consensus" - Make edge.type parameter options explicit: "both", "inter", "intra", "both2" - Improved self-documenting code showing all available options These changes improve: - Label visibility and customization in volcano plots - Plot margin handling and aesthetics - Code documentation and usability 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <[email protected]>
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ggVolcano improvements:
plotMultiPartiteGraph2 improvements:
These changes improve:
🤖 Generated with Claude Code