Add deprecated functions and deprecation warnings

hdf5-sys/src/h5a.rs

@@ -3,6 +3,10 @@ use std::mem;
 use crate::internal_prelude::*;
 
 use crate::h5o::H5O_msg_crt_idx_t;
+pub use {
+    H5A_operator2_t as H5A_operator_t, H5A_operator2_t as H5A_operator_r, H5Acreate2 as H5Acreate,
+    H5Aiterate2 as H5Aiterate,
+};
 
 #[repr(C)]
 #[derive(Copy, Clone)]
@@ -19,6 +23,15 @@ impl Default for H5A_info_t {
     }
 }
 
+#[deprecated(note = "deprecated in HDF5 1.8.0, use H5A_operator2_t")]
+pub type H5A_operator1_t = Option<
+    extern "C" fn(
+        location_id: hid_t,
+        attr_name: *const c_char,
+        operator_data: *mut c_void,
+    ) -> herr_t,
+>;
+
 pub type H5A_operator2_t = Option<
     extern "C" fn(
         location_id: hid_t,
@@ -92,4 +105,19 @@ extern "C" {
     pub fn H5Aexists_by_name(
         obj_id: hid_t, obj_name: *const c_char, attr_name: *const c_char, lapl_id: hid_t,
     ) -> htri_t;
+
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Aget_info")]
+    pub fn H5Aget_num_attrs(loc_id: hid_t) -> c_int;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Aopen_by_idx")]
+    pub fn H5Aopen_idx(loc_id: hid_t, idx: c_uint) -> hid_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Aopen_by_name")]
+    pub fn H5Aopen_name(loc_id: hid_t, name: *const c_char) -> hid_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Acreate2")]
+    pub fn H5Acreate1(
+        loc_id: hid_t, name: *const c_char, type_id: hid_t, space_id: hid_t, acpl_id: hid_t,
+    ) -> hid_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Aiterate2")]
+    pub fn H5Aiterate1(
+        loc_id: hid_t, attr_num: *mut c_uint, op: H5A_operator1_t, op_data: *mut c_void,
+    ) -> herr_t;
 }

hdf5-sys/src/h5d.rs

@@ -6,6 +6,7 @@ pub use self::H5D_mpio_actual_chunk_opt_mode_t::*;
 pub use self::H5D_mpio_actual_io_mode_t::*;
 pub use self::H5D_mpio_no_collective_cause_t::*;
 pub use self::H5D_space_status_t::*;
+pub use {H5Dcreate2 as H5D_create, H5Dopen2 as H5Dopen};
 
 use crate::internal_prelude::*;
 
@@ -178,6 +179,7 @@ extern "C" {
         buf: *mut c_void, type_id: hid_t, space_id: hid_t, op: H5D_operator_t,
         operator_data: *mut c_void,
     ) -> herr_t;
+    #[cfg_attr(hdf5_1_12_0, deprecated(note = "deprecated in HDF5 1.12.0, use H5Treclaim"))]
     pub fn H5Dvlen_reclaim(
         type_id: hid_t, space_id: hid_t, plist_id: hid_t, buf: *mut c_void,
     ) -> herr_t;
@@ -189,6 +191,13 @@ extern "C" {
     ) -> herr_t;
     pub fn H5Dset_extent(dset_id: hid_t, size: *const hsize_t) -> herr_t;
     pub fn H5Ddebug(dset_id: hid_t) -> herr_t;
+
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Dcreate2")]
+    pub fn H5Dcreate1(
+        file_id: hid_t, name: *const c_char, type_id: hid_t, space_id: hid_t, dcpl_id: hid_t,
+    ) -> hid_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Dopen2")]
+    pub fn H5Dopen1(file_id: hid_t, name: *const c_char) -> hid_t;
 }
 
 #[cfg(hdf5_1_8_11)]

hdf5-sys/src/h5e.rs

@@ -2,6 +2,11 @@ use std::mem;
 
 pub use self::H5E_direction_t::*;
 pub use self::H5E_type_t::*;
+pub use {
+    H5E_auto2_t as H5E_auto_t, H5E_error2_t as H5E_error_t, H5E_walk2_t as H5E_walk_t,
+    H5Eclear2 as H5Eclear, H5Eget_auto2 as H5Eget_auto, H5Eprint2 as H5Eprint, H5Epush2 as H5Epush,
+    H5Eset_auto2 as H5Eset_auto, H5Ewalk2 as H5Ewalk,
+};
 
 use crate::internal_prelude::*;
 
@@ -14,6 +19,21 @@ pub enum H5E_type_t {
     H5E_MINOR = 1,
 }
 
+pub type H5E_major_t = hid_t;
+pub type H5E_minor_t = hid_t;
+
+#[repr(C)]
+#[derive(Debug, Copy, Clone)]
+#[deprecated(note = "deprecated in HDF5 1.8.0, use H5E_error2_t")]
+pub struct H5E_error1_t {
+    maj_num: H5E_major_t,
+    min_num: H5E_minor_t,
+    func_name: *const c_char,
+    file_name: *const c_char,
+    line: c_uint,
+    desc: *const c_char,
+}
+
 #[repr(C)]
 #[derive(Debug, Copy, Clone)]
 pub struct H5E_error2_t {
@@ -39,6 +59,13 @@ pub enum H5E_direction_t {
     H5E_WALK_DOWNWARD = 1,
 }
 
+#[deprecated(note = "deprecated in HDF5 1.8.0, use H5E_walk2_t")]
+pub type H5E_walk1_t = Option<
+    unsafe extern "C" fn(n: c_int, err_desc: *mut H5E_error1_t, client_data: *mut c_void) -> herr_t,
+>;
+#[deprecated(note = "deprecated in HDF5 1.8.0, use H5E_auto2_t")]
+pub type H5E_auto1_t = Option<unsafe extern "C" fn(client_data: *mut c_void) -> herr_t>;
+
 pub type H5E_walk2_t = Option<
     unsafe extern "C" fn(
         n: c_uint,
@@ -80,6 +107,28 @@ extern "C" {
         msg_id: hid_t, type_: *mut H5E_type_t, msg: *mut c_char, size: size_t,
     ) -> ssize_t;
     pub fn H5Eget_num(error_stack_id: hid_t) -> ssize_t;
+
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Epush2")]
+    pub fn H5Epush1(
+        file: *const c_char, func: *const c_char, line: c_uint, maj: H5E_major_t, min: H5E_minor_t,
+        str_: *const c_char,
+    ) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Eprint2")]
+    pub fn H5Eprint1(stream: *mut FILE) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Ewalk2")]
+    pub fn H5Ewalk1(
+        direction: H5E_direction_t, func: H5E_walk1_t, client_data: *mut c_void,
+    ) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Eget_auto2")]
+    pub fn H5Eget_auto1(func: *mut H5E_auto1_t, client_data: *mut *mut c_void) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Eset_auto2")]
+    pub fn H5Eset_auto1(func: H5E_auto1_t, client_data: *mut c_void) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Eclear2")]
+    pub fn H5Eclear1() -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Eget_msg")]
+    pub fn H5Eget_major(maj: H5E_major_t) -> *mut c_char;
+    #[deprecated(note = "deprecated in HDF5 1.8.0")]
+    pub fn H5Eget_minor(min: H5E_minor_t) -> *mut c_char;
 }
 
 pub use self::globals::*;

hdf5-sys/src/h5f.rs

@@ -4,6 +4,16 @@ pub use self::H5F_close_degree_t::*;
 pub use self::H5F_libver_t::*;
 pub use self::H5F_mem_t::*;
 pub use self::H5F_scope_t::*;
+#[cfg(not(hdf5_1_10_0))]
+pub use {
+    H5F_info1_t as H5F_info_t, H5F_info1_t__sohm as H5F_info_t__sohm, H5Fget_info1 as H5Fget_info,
+};
+#[cfg(hdf5_1_10_0)]
+pub use {
+    H5F_info2_t as H5F_info_t, H5F_info2_t__free as H5F_info_t__free,
+    H5F_info2_t__sohm as H5F_info_t__sohm, H5F_info2_t__super as H5F_info_t__super,
+    H5Fget_info2 as H5Fget_info,
+};
 
 use crate::internal_prelude::*;
 
@@ -60,12 +70,12 @@ impl Default for H5F_close_degree_t {
 #[cfg_attr(hdf5_1_10_0, deprecated(note = "deprecated in HDF5 1.10.0, use H5F_info2_t"))]
 #[repr(C)]
 #[derive(Debug, Copy, Clone)]
-pub struct H5F_info_t {
+pub struct H5F_info1_t {
     pub super_ext_size: hsize_t,
-    pub sohm: H5F_info_t__sohm,
+    pub sohm: H5F_info1_t__sohm,
 }
 
-impl Default for H5F_info_t {
+impl Default for H5F_info1_t {
     fn default() -> Self {
         unsafe { mem::zeroed() }
     }
@@ -74,12 +84,12 @@ impl Default for H5F_info_t {
 #[cfg_attr(hdf5_1_10_0, deprecated(note = "deprecated in HDF5 1.10.0, use H5F_info2_t"))]
 #[repr(C)]
 #[derive(Debug, Copy, Clone)]
-pub struct H5F_info_t__sohm {
+pub struct H5F_info1_t__sohm {
     pub hdr_size: hsize_t,
     pub msgs_info: H5_ih_info_t,
 }
 
-impl Default for H5F_info_t__sohm {
+impl Default for H5F_info1_t__sohm {
     fn default() -> Self {
         unsafe { mem::zeroed() }
     }
@@ -127,11 +137,6 @@ impl Default for H5F_libver_t {
     }
 }
 
-#[cfg(not(hdf5_1_10_0))]
-extern "C" {
-    pub fn H5Fget_info(obj_id: hid_t, bh_info: *mut H5F_info_t) -> herr_t;
-}
-
 extern "C" {
     #[cfg_attr(
         hdf5_1_10_2,
@@ -308,14 +313,13 @@ mod hdf5_1_10_0 {
         ) -> ssize_t;
         pub fn H5Fformat_convert(fid: hid_t) -> herr_t;
         pub fn H5Fget_info2(obj_id: hid_t, finfo: *mut H5F_info2_t) -> herr_t;
-        #[deprecated(note = "deprecated in HDF5 1.10.0, use H5Fget_info2")]
-        pub fn H5Fget_info1(obj_id: hid_t, finfo: *mut H5F_info1_t) -> herr_t;
     }
+}
 
-    pub use super::{
-        H5F_info_t as H5F_info1_t, H5F_info_t__sohm as H5F_info1_t__sohm,
-        H5Fget_info1 as H5Fget_info,
-    };
+extern "C" {
+    #[cfg_attr(hdf5_1_10_0, deprecated(note = "deprecated in HDF5 1.10.0, use H5Fget_info2"))]
+    #[cfg_attr(not(hdf5_1_10_0), link_name = "H5Fget_info")]
+    pub fn H5Fget_info1(obj_id: hid_t, finfo: *mut H5F_info1_t) -> herr_t;
 }
 
 #[cfg(hdf5_1_10_0)]

hdf5-sys/src/h5g.rs

@@ -1,10 +1,12 @@
 use std::mem;
 
 pub use self::H5G_storage_type_t::*;
+pub use {H5Gcreate2 as H5Gcreate, H5Gopen2 as H5Gopen};
 
 use crate::internal_prelude::*;
 
 use crate::h5l::{H5L_type_t, H5L_SAME_LOC, H5L_TYPE_ERROR, H5L_TYPE_HARD, H5L_TYPE_SOFT};
+use crate::h5o::H5O_stat_t;
 
 pub const H5G_SAME_LOC: hid_t = H5L_SAME_LOC;
 
@@ -62,10 +64,75 @@ extern "C" {
         n: hsize_t, ginfo: *mut H5G_info_t, lapl_id: hid_t,
     ) -> herr_t;
     pub fn H5Gclose(group_id: hid_t) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Gcreate2")]
+    pub fn H5Gcreate1(loc_id: hid_t, name: *const c_char, size_hint: size_t) -> hid_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Oget_comment")]
+    pub fn H5Gget_comment(
+        loc_id: hid_t, name: *const c_char, bufsize: size_t, buf: *mut c_char,
+    ) -> c_int;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Lget_val")]
+    pub fn H5Gget_linkval(loc_id: hid_t, name: *const c_char, comment: *const c_char) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Gget_info")]
+    pub fn H5Gget_num_objs(loc_id: hid_t, num_objs: *mut hsize_t) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Oget_info or H5Lget_info")]
+    pub fn H5Gget_objinfo(
+        loc_id: hid_t, name: *const c_char, follow_link: hbool_t, statubuf: *mut H5G_stat_t,
+    ) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Lget_name_by_idx")]
+    pub fn H5Gget_objname_by_idx(
+        loc_id: hid_t, idx: hsize_t, name: *mut c_char, size: size_t,
+    ) -> ssize_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Oget_info")]
+    pub fn H5Gget_objtype_by_idx(loc_id: hid_t, idx: hsize_t) -> H5G_obj_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Lcreate_hard or H5Lcreate_soft")]
+    pub fn H5Glink(
+        cur_loc_id: hid_t, type_: H5G_link_t, cur_name: *const c_char, new_name: *const c_char,
+    ) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Lcreate_hard or H5Lcreate_soft")]
+    pub fn H5Glink2(
+        cur_loc_id: hid_t, cur_name: *const c_char, type_: H5G_link_t, new_loc_id: hid_t,
+        new_name: *const c_char,
+    ) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Lmove")]
+    pub fn H5Gmove(src_loc_id: hid_t, src_name: *const c_char, dst_name: *const c_char) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Lmove")]
+    pub fn H5Gmove2(
+        src_loc_id: hid_t, src_name: *const c_char, dst_loc_id: hid_t, dst_name: *const c_char,
+    ) -> herr_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Gopen2")]
+    pub fn H5Gopen1(loc_id: hid_t, name: *const c_char) -> hid_t;
+    #[deprecated(note = "deprecated in HDF5 1.8.0, use H5Ldelete")]
+    pub fn H5Gunlink(loc_id: hid_t, name: *const c_char) -> herr_t;
 }
 
 #[cfg(hdf5_1_10_0)]
 extern "C" {
     pub fn H5Gflush(group_id: hid_t) -> herr_t;
     pub fn H5Grefresh(group_id: hid_t) -> herr_t;
 }
+
+#[repr(C)]
+#[derive(Debug, Copy, Clone)]
+pub enum H5G_obj_t {
+    H5G_UNKNOwN = -1,
+    H5G_GROUP,
+    H5G_DATASET,
+    H5G_TYPE,
+    H5G_LINK,
+    H5G_UDLINK,
+    H5G_RESERVED_5,
+    H5G_RESERVED_6,
+    H5G_RESERVED_7,
+}
+
+#[repr(C)]
+#[derive(Debug, Copy, Clone)]
+pub struct H5G_stat_t {
+    fileno: [c_ulong; 2],
+    objno: [c_ulong; 2],
+    nlink: c_uint,
+    type_: H5G_obj_t,
+    mtime: time_t,
+    linklen: size_t,
+    ohdr: H5O_stat_t,
+}