reduce atol check for geneformer

NVIDIA · Nov 12, 2024 · dcc75ec · dcc75ec
1 parent 2f05f9c
commit dcc75ec
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/sub-packages/bionemo-geneformer/tests/bionemo/geneformer/test_stop_and_go.py b/sub-packages/bionemo-geneformer/tests/bionemo/geneformer/test_stop_and_go.py
@@ -97,6 +97,7 @@ class TestGeneformerStopAndGo(stop_and_go.StopAndGoHarness):
     limit_val_batches: int = 2
     lr: float = 1e-4
     precision: Literal["16-mixed", "bf16-mixed", "32"] = MODEL_PRECISION
+    train_output_atol: float = 2e-2
 
     @override
     @classmethod

diff --git a/sub-packages/bionemo-testing/src/bionemo/testing/harnesses/stop_and_go.py b/sub-packages/bionemo-testing/src/bionemo/testing/harnesses/stop_and_go.py
@@ -106,6 +106,8 @@ class StopAndGoHarness(ABC):
     limit_val_batches: int
     lr: float = 1e-4
     precision: Literal["16-mixed", "bf16-mixed", "32"]
+    train_output_atol: float = 1e-3
+    other_output_atol: float = 1e-4
 
     # class variables that will be setup in setUpClass
     tempdir: tempfile.TemporaryDirectory
@@ -336,9 +338,9 @@ def test_stop_and_go_consistency(self, callback_type):
         assert interrupted_callback.data, f"No data found for {callback_type}"
 
         if callback_type == testing_callbacks.TrainOutputCallback:
-            atol = 1e-3
+            atol = self.train_output_atol
         else:
-            atol = 1e-4
+            atol = self.other_output_atol
 
         recursive_assert_approx_equal(interrupted_callback.data, continuous_callback.data, atol=atol)