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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

Simplify BIONEMO_HOME env var setting in ci scripts.
#608 opened Jan 15, 2025 by shoobieieiee Loading…
9 tasks
1
add check for duplicate actions
#607 opened Jan 15, 2025 by pstjohn Loading…
9 tasks
Bump rsync and other dockerfile lints
#603 opened Jan 15, 2025 by pstjohn Loading…
9 tasks
1
Add extra echoes during docker build in CI
#583 opened Jan 8, 2025 by trvachov Loading…
2 of 11 tasks
6
add weight decay
#564 opened Jan 1, 2025 by sichu2023 Loading…
2
add generic torchmetric ppl logging on esm2
#557 opened Dec 28, 2024 by sichu2023 • Draft
@sichu2023
ESM-2 to NeMo checkpoint conversion
#537 opened Dec 16, 2024 by pstjohn Loading…
12
[DO NOT REVIEW AS A PR] little example of how we might use nemo-run for handling SLURM
#536 opened Dec 16, 2024 by skothenhill-nv Loading…
add spawn cuda process testing
#535 opened Dec 16, 2024 by sichu2023 • Draft
2
Implement megatron-aware perplexity in torchmetrics
#525 opened Dec 12, 2024 by sichu2023 Loading…
@sichu2023
15
Re-opens Conda-Based Compatibility Test Images
#518 opened Dec 9, 2024 by skothenhill-nv Loading…
@malcolmgreaves
2
wip - Mg/pytorch source builds
#506 opened Dec 6, 2024 by malcolmgreaves • Draft
5 tasks
[Draft] Unify inference interface - request for comments
#505 opened Dec 6, 2024 by skothenhill-nv Loading…
7
single Numpy array option
#503 opened Dec 5, 2024 by polinabinder1 • Draft
7
Savitha/new profiling experiments
#500 opened Dec 4, 2024 by savitha-eng • Draft
5 tasks
1
pytest in CI: changing source of data download to ngc (bionemo2) INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline
#498 opened Dec 4, 2024 by dorotat-nv Loading…
@dorotat-nv
2
Refactor bucket batch sampler to support DDP sampling
#478 opened Nov 26, 2024 by guoqing-zhou • Draft
5 tasks
20
Polinabinder/file extend
#477 opened Nov 26, 2024 by polinabinder1 Loading…
26
Add a utility function for extending a file with the content of another file. SKIP_CI Completely skips the CI pipeline
#471 opened Nov 23, 2024 by edawson Loading…
Remove batch size multiple requirement for inference
#464 opened Nov 20, 2024 by jstjohn Loading…
2
Implement elementary bond featurizers
#463 opened Nov 20, 2024 by sveccham Loading…
@sveccham
2
refactor ppl callback calculation
#459 opened Nov 20, 2024 by pstjohn • Draft
1
Refactor SCDL Row Feature Index for Performance Improvement
#443 opened Nov 15, 2024 by savitha-eng • Draft
5 tasks
1
Amgen's AMPLIFY Port contribution any PRs coming in as contributions from folks outside of bionemo fw engineering team at NVIDIA SKIP_CI Completely skips the CI pipeline
#442 opened Nov 15, 2024 by ynashed • Draft
5 tasks
Update docs to remove NGC config requirements documentation Improvements or additions to documentation SKIP_CI Completely skips the CI pipeline
#439 opened Nov 15, 2024 by tshimko-nv Loading…
4
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