add init to tests

Signed-off-by: Peter St. John <[email protected]>

sub-packages/bionemo-amplify/tests/bionemo/amplify/__init__.py

@@ -0,0 +1,14 @@
+# SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
+# SPDX-License-Identifier: LicenseRef-Apache2
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.

sub-packages/bionemo-amplify/tests/bionemo/amplify/test_model.py

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+# SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
+# SPDX-License-Identifier: LicenseRef-Apache2
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+from bionemo.amplify.model import AMPLIFYConfig, AMPLIFYModel
+from bionemo.amplify.tokenizer import BioNeMoAMPLIFYTokenizer
+from bionemo.esm2.model.embedding import ESM2Embedding
+from bionemo.llm.model.biobert.model import MegatronBioBertModel
+from bionemo.testing import megatron_parallel_state_utils
+
+
+def test_amplify_model_initialized():
+    with megatron_parallel_state_utils.distributed_model_parallel_state():
+        tokenizer = BioNeMoAMPLIFYTokenizer()
+        config = AMPLIFYConfig()
+        model = config.configure_model(tokenizer)
+
+        assert isinstance(model, MegatronBioBertModel)
+        assert isinstance(model, AMPLIFYModel)
+        assert isinstance(model.embedding, ESM2Embedding)

sub-packages/bionemo-esm2/tests/bionemo/esm2/data/__init__.py

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+# SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
+# SPDX-License-Identifier: LicenseRef-Apache2
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.