small bug fix (#415)

Adding a needed underscore.
NVIDIA · Nov 8, 2024 · 631e5de · 631e5de
1 parent 0c923ed
commit 631e5de
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/sub-packages/bionemo-scdl/pyproject.toml b/sub-packages/bionemo-scdl/pyproject.toml
@@ -14,7 +14,7 @@ dependencies = [
     # bionemo sub-packages
     'bionemo-core',
     # external
-    'anndata>=0.10.7',
+    'anndata>=0.11.0',
     'pandas>=2.2.1',
     'pyarrow>=16.0.0',
     'scipy>=1.11.1',

diff --git a/sub-packages/bionemo-scdl/src/bionemo/scdl/io/single_cell_memmap_dataset.py b/sub-packages/bionemo-scdl/src/bionemo/scdl/io/single_cell_memmap_dataset.py
@@ -552,7 +552,7 @@ def paginated_load_h5ad(
         # Read the row indices into a memory map.
         mode = Mode.CREATE_APPEND
         self.row_index = _create_row_memmaps(num_rows, Path(self.data_path), mode, self.dtypes)
-        self.row_index[:] = adata.X.indptr.astype(int)
+        self.row_index[:] = adata.X._indptr.astype(int)
 
         # The data from each column and data chunk of the original anndata file is read in. This is saved into the final
         # location of the memmap file. In this step, it is saved in the binary file format.