Readme needs to be clear that for phased assemblies that are also reference samples, the haplotype number should be part of the sample name, e.g.: `gorilla.1.paths` Test this prior to update and check relevant workflow code.
Readme needs to be clear that for phased assemblies that are also reference samples, the haplotype number should be part of the sample name, e.g.:
gorilla.1.pathsTest this prior to update and check relevant workflow code.