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Add and test GR tag during surject (plus implement some kind of post-processing)

Status: Open.

#46 In NBISweden/grave;

· CormacKinsella opened on Jun 26, 2026

VCF processing, annotation intersection

Status: Open.

#42 In NBISweden/grave;

· CormacKinsella opened on Jun 24, 2026

graphs with phased haplotypes - potential name clash in multiref mode

Status: Open.

#41 In NBISweden/grave;

· CormacKinsella opened on Jun 24, 2026

Intersect graph & linear VCFs - consensus mode?

Status: Open.

#38 In NBISweden/grave;

· CormacKinsella opened on Jun 17, 2026

aDNA graph construction and MAPQ defaults

Status: Open.

#35 In NBISweden/grave;

· CormacKinsella opened on Jun 16, 2026

kraken2 prefiltering

Status: Open.

#34 In NBISweden/grave;

· CormacKinsella opened on Jun 15, 2026

Update links in test ymls (once repo public)

Status: Open.

#26 In NBISweden/grave;

· CormacKinsella opened on Jan 30, 2026

Unmerged aDNA, consider improvements

Status: Open.

Chore

#25 In NBISweden/grave;

· CormacKinsella opened on Oct 7, 2025

VG_GENOTYPE module future improvements

idealWaiting on changes to external tools.Waiting on changes to external tools.

Status: Open.

#24 In NBISweden/grave;

· CormacKinsella opened on Oct 6, 2025

GATK caller

Status: Open.

#20 In NBISweden/grave;

· CormacKinsella opened on Sep 16, 2025

remove multiref requirement for paths files

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#18 In NBISweden/grave;

· CormacKinsella opened on Sep 9, 2025

read length distribution reports & GC content

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#14 In NBISweden/grave;

· CormacKinsella opened on Aug 19, 2025