I am a Computational Biologist with a PhD in Molecular Biology and Postdoctoral experience in multi-omics research.
- Experienced in large-scale data analysis using HPC environments such as Compute Canada servers
- Passionate about integrating bioinformatics, molecular biology, and structural biology tools to design data-driven solutions in agriculture and biotechnology sector
- Transcriptomics: Reference and de novo assembly, differential gene expression, functional annotation and pathway analysis
- Genomics and Population Genetics: Assembly, scaffolding and gap filling, Variant calling, Genome Wide Association Studies (GWAS) and population structure analysis
- Proteomics and Structural Biology: Highthrougput protein analysis including HDX-MS data analysis, fluorescence-based assays and biochemical activity measurements, molecular docking and protein structure prediction
- Phylogenetics and Sequence Analysis: Multiple sequence alignment, phylogenetic tree construction and domain identification
- Data Visualization (R): Automated visualization pipelines for large-scale datasets. Custom plots for transcriptomics, proteomics, and biochemical assays using ggplot2, ComplexHeatmap and pheatmap
- Bioinformatics Pipelines and HPC: Parallelized workflows, multi-omics integration and large-scale data mining