Awesome-Science-Agents

This repository compiles a list of papers/tools related to agents in AI for Science field. We’re continually improving and expanding this collection. If you find relevant papers or tools that should be included, please feel free to open an issue or email me at [email protected]

Science General

[August 2024] "The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery." Chris Lu et al. arXiv 2024. paper | code

[June 2023] "Scientific discovery in the age of artificial intelligence." Hanchen Wang et al. Nature 2023. paper

[December 2023] "PaperQA: Retrieval-augmented generative agent for scientific research." Jakub Lála et al. arXiv 2023. paper

[June 2024] "AutoSurvey: Large Language Models Can Automatically Write Surveys." Yidong Wang et al. NeurIPS 2024 Conference. paper | code

Physical Sciences (Physics/Chemistry/Earth Sciences/Astronomy)

[July 2024] "A Review of Large Language Models and Autonomous Agents in Chemistry." Mayk Caldas Ramos et al. arXiv 2024. paper

[December 2023] "Autonomous chemical research with large language models." Daniil A Boiko et al. Nature 2023. paper

[December 2023] "Augmenting large language models with chemistry tools." Andres M Bran et al. NeurIPS 2023 AI for Science Workshop. paper

Life Science (Biology/Botany/Zoology/Microbiology/Neuroscience)

[October 2024] "An AI Agent for Fully Automated Multi-Omic Analyses." Juexiao Zhou et al. Advanced Science 2024. paper

[October 2024] "BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments." Yusuf Roohani et al. arXiv 2024. paper

[August 2024] "BioImage.IO Chatbot: a community-driven AI assistant for integrative computational bioimaging." Wanlu Lei et al. Nature Methods 2024. paper

[August 2024] "TourSynbio: A Multi-Modal Large Model and Agent Framework to Bridge Text and Protein Sequences for Protein Engineering." Y. Shen et al. arXiv 2024. paper

[July 2024] "MMedAgent: Learning to Use Medical Tools with Multi-modal Agent." Binxu Li et al. arXiv 2024. paper

[July 2024] "ClinicalAgent: Clinical Trial Multi-Agent System with Large Language Model-based Reasoning." Yue Ling et al. arXiv 2024. paper

[July 2024] "Empowering Biomedical Discovery with AI Agents." Shanghua Gao et al. arXiv 2024. paper

[June 2024] "Omega—harnessing the power of large language models for bioimage analysis." Loïc A Royer. Nature Methods 2024. paper

[May 2024] "CellAgent: An LLM-driven Multi-Agent Framework for Automated Single-cell Data Analysis." Yihang Xiao et al. bioRxiv 2024. paper

[May 2024] "BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow." Qi Xin et al. bioRxiv 2024. paper

[May 2024] "Agent Hospital: A Simulacrum of Hospital with Evolvable Medical Agents." Junkai Li et al. arXiv 2024. paper

[April 2024] "CRISPR-GPT: An LLM Agent for Automated Design of Gene-Editing Experiments." Kaixuan Huang et al. arXiv 2024. paper

[February 2024] "A multimodal generative AI copilot for human pathology." Ming Y. Lu et al. Nature 2024. paper

[December 2023] "De novo drug design using reinforcement learning with multiple GPT agents." Xiuyuan Hu et al. NeurIPS 2023. paper

[November 2023] "MedAgents: Large Language Models as Collaborators for Zero-shot Medical Reasoning." Xiangru Tang et al. arXiv 2023. paper

[July 2023] "Epidemic modeling with generative agents." Ross Williams et al. arXiv 2023. paper

[August 2023] "Zhongjing: Enhancing the Chinese Medical Capabilities of Large Language Model through Expert Feedback and Real-world Multi-turn Dialogue." S. Yang et al. arXiv 2023. paper

[May 2023] "HuatuoGPT: Towards Taming Language Model to Be a Doctor." H. Zhang et al. arXiv 2023. paper

[March 2023] "Biological research and self-driving labs in deep space supported by artificial intelligence." Lauren M Sanders et al. Nature Machine Intelligence 2023. paper

[October 2020] "A Virtual Conversational Agent for Teens with Autism Spectrum Disorder: Experimental Results and Design Lessons." M. R. Ali et al. ACM International Conference on Intelligent Virtual Agents 2020. paper

Social Science (Psychology/Sociology/Economics/Anthropology/ Political Science)

[November 2023] "ALYMPICS: Language Agents Meet Game Theory." Shaoguang Mao et al. arXiv 2023. paper

[October 2023] "Lyfe Agents: Generative agents for low-cost real-time social interactions." Zhao Kaiya et al. arXiv 2023. paper

[October 2023] "SOTOPIA: Interactive Evaluation for Social Intelligence in Language Agents." Xuhui Zhou et al. arXiv 2023. paper

[October 2023] "Large Language Model-Empowered Agents for Simulating Macroeconomic Activities." Nian Li et al. arXiv 2023. paper

[October 2023] "Exploring Collaboration Mechanisms for LLM Agents: A Social Psychology View." Jintian Zhang et al. arXiv 2023. paper

[July 2023] "S³: Social-network Simulation System with Large Language Model-Empowered Agents." Chen Gao et al. arXiv 2023. paper

[July 2023] "The SocialAI school: Insights from developmental psychology towards artificial socio-cultural agents." Grgur Kovač et al. arXiv 2023. paper

[July 2023] "Understanding the benefits and challenges of using large language model-based conversational agents for mental well-being support." Zilin Ma et al. arXiv 2023. paper

[April 2023] "Generative agents: Interactive simulacra of human behavior." Joon Sung Park et al. arXiv 2023. paper

[January 2023] "Large language models as simulated economic agents: What can we learn from homo silicus?" John J Horton. National Bureau of Economic Research 2023. paper