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feat(clp-package): Add support for deleting archives that are exclusively within a time range. #594

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Nov 27, 2024
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1 change: 1 addition & 0 deletions components/clp-package-utils/clp_package_utils/general.py
Original file line number Diff line number Diff line change
Expand Up @@ -51,6 +51,7 @@ class JobType(KebabCaseStrEnum):
FILE_EXTRACTION = auto()
IR_EXTRACTION = auto()
SEARCH = auto()
DEL_ARCHIVE = auto()


class DockerMount:
Expand Down
107 changes: 107 additions & 0 deletions components/clp-package-utils/clp_package_utils/scripts/del_archives.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,107 @@
import argparse
import logging
import pathlib
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import subprocess
import sys

from clp_package_utils.general import (
CLP_DEFAULT_CONFIG_FILE_RELATIVE_PATH,
dump_container_config,
generate_container_config,
generate_container_name,
generate_container_start_cmd,
get_clp_home,
JobType,
load_config_file,
validate_and_load_db_credentials_file,
)

# Setup logging
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# Create logger
logger = logging.getLogger(__file__)
logger.setLevel(logging.INFO)
# Setup console logging
logging_console_handler = logging.StreamHandler()
logging_formatter = logging.Formatter("%(asctime)s [%(levelname)s] [%(name)s] %(message)s")
logging_console_handler.setFormatter(logging_formatter)
logger.addHandler(logging_console_handler)


def main(argv):
clp_home = get_clp_home()
default_config_file_path = clp_home / CLP_DEFAULT_CONFIG_FILE_RELATIVE_PATH

args_parser = argparse.ArgumentParser(description="Prune the out-dated archives.")
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args_parser.add_argument(
"--config",
"-c",
default=str(default_config_file_path),
help="CLP package configuration file.",
)
args_parser.add_argument(
"--begin-ts",
type=int,
default=0,
help="Time range filter lower-bound (inclusive) as milliseconds" " from the UNIX epoch.",
)
args_parser.add_argument(
"--end-ts",
type=int,
required=True,
help="Time range filter upper-bound (inclusive) as milliseconds" " from the UNIX epoch.",
)
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parsed_args = args_parser.parse_args(argv[1:])

# Validate and load config file
try:
config_file_path = pathlib.Path(parsed_args.config)
clp_config = load_config_file(config_file_path, default_config_file_path, clp_home)
clp_config.validate_logs_dir()

# Validate and load necessary credentials
validate_and_load_db_credentials_file(clp_config, clp_home, False)
except:
logger.exception("Failed to load config.")
return -1
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# Validate the input timestamp
begin_ts = parsed_args.begin_ts
end_ts = parsed_args.end_ts
if end_ts < 0 or begin_ts < 0:
logger.error("begin_ts and end_ts must be positive.")
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return -1

container_name = generate_container_name(JobType.DEL_ARCHIVE)
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container_clp_config, mounts = generate_container_config(clp_config, clp_home)
generated_config_path_on_container, generated_config_path_on_host = dump_container_config(
container_clp_config, clp_config, container_name
)

necessary_mounts = [mounts.clp_home, mounts.logs_dir, mounts.archives_output_dir]
container_start_cmd = generate_container_start_cmd(
container_name, necessary_mounts, clp_config.execution_container
)

# fmt: off
del_archive_cmd = [
"python3",
"-m", "clp_package_utils.scripts.native.del_archives",
"--config", str(generated_config_path_on_container),
str(begin_ts),
str(end_ts)

]
# fmt: on

cmd = container_start_cmd + del_archive_cmd
subprocess.run(cmd, check=True)

# Remove generated files
generated_config_path_on_host.unlink()

return 0


if "__main__" == __name__:
sys.exit(main(sys.argv))
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Since this is a brand new script, let's use our latest conventions and best practices.

Original file line number Diff line number Diff line change
@@ -0,0 +1,150 @@
import argparse
import logging
import pathlib
import shutil
import sys
from contextlib import closing
from typing import List, Optional

from clp_py_utils.clp_config import CLPConfig
from clp_py_utils.sql_adapter import SQL_Adapter

from clp_package_utils.general import (
CLP_DEFAULT_CONFIG_FILE_RELATIVE_PATH,
get_clp_home,
load_config_file,
)

# Setup logging
# Create logger
logger = logging.getLogger(__file__)
logger.setLevel(logging.INFO)
# Setup console logging
logging_console_handler = logging.StreamHandler()
logging_formatter = logging.Formatter("%(asctime)s [%(levelname)s] [%(name)s] %(message)s")
logging_console_handler.setFormatter(logging_formatter)
logger.addHandler(logging_console_handler)
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# Consider deduplicate this
def validate_and_load_config_file(
clp_home: pathlib.Path,
config_file_path: pathlib.Path,
default_config_file_path: pathlib.Path,
) -> Optional[CLPConfig]:
"""
Validates and loads the config file.
:param clp_home:
:param config_file_path:
:param default_config_file_path:
:return: clp_config on success, None otherwise.
"""
try:
clp_config = load_config_file(config_file_path, default_config_file_path, clp_home)
clp_config.validate_archive_output_dir()
clp_config.validate_logs_dir()
return clp_config
except Exception:
logger.exception("Failed to load config.")
return None


def handle_file_deletion(
clp_home: pathlib.Path,
config_file_path: pathlib.Path,
default_config_file_path: pathlib.Path,
begin_ts: int,
end_ts: int,
) -> int:
# Validate and load config file
clp_config = validate_and_load_config_file(clp_home, config_file_path, default_config_file_path)
if clp_config is None:
return -1

archives_dir = clp_config.archive_output.directory
database_config = clp_config.database
archives_to_delete: List[str]

logger.info(f"Start deleting archives from database")
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try:
sql_adapter = SQL_Adapter(database_config)
clp_db_connection_params = database_config.get_clp_connection_params_and_type(True)
table_prefix = clp_db_connection_params["table_prefix"]
with closing(sql_adapter.create_connection(True)) as db_conn, closing(
db_conn.cursor(dictionary=True)
) as db_cursor:
db_cursor.execute(
f"""
DELETE FROM `{table_prefix}archives` WHERE
begin_timestamp >= {begin_ts} AND end_timestamp <= {end_ts}
RETURNING id
"""
)
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@coderabbitai coderabbitai bot Nov 26, 2024

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⚠️ Potential issue

Resolve timestamp handling in SQL query

The current implementation has an unresolved issue with large integer timestamps. Consider alternative approaches for handling large integers.

Here are potential solutions:

  1. Use string representation:
-                f"""
-                DELETE FROM `{table_prefix}archives` WHERE
-                begin_timestamp >= {begin_ts} AND end_timestamp <= {end_ts}
-                RETURNING id
-                """
+                f"DELETE FROM `{table_prefix}archives` WHERE begin_timestamp >= %s AND end_timestamp <= %s RETURNING id",
+                (str(begin_ts), str(end_ts))
  1. Use DECIMAL type:
from decimal import Decimal

db_cursor.execute(
    f"DELETE FROM `{table_prefix}archives` WHERE begin_timestamp >= %s AND end_timestamp <= %s RETURNING id",
    (Decimal(begin_ts), Decimal(end_ts))
)

Please test these solutions to determine which one resolves the integer overflow issue in your environment.

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Thanks, managed to resolve it

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@haiqi96, great to hear that you resolved the issue!


If you found this review helpful, would you consider giving us a shout-out on X?
Thank you for using CodeRabbit!

results = db_cursor.fetchall()
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if 0 == len(results):
logger.info("No archive meets the deletion condition.")
return 0

archives_to_delete = [result["id"] for result in results]
db_cursor.execute(
f"""
DELETE FROM `{table_prefix}files`
WHERE archive_id in ({', '.join(['%s'] * len(archives_to_delete))})
""",
archives_to_delete,
)
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db_conn.commit()
except Exception:
logger.exception("Failed to delete archives from database, abort.")
return -1

logger.info(f"Finished deleting archives from the database")
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for archive in archives_to_delete:
logger.info(f"Deleting archive {archive} from the storage")
archive_path = archives_dir / archive
if not archive_path.is_dir():
logger.warning(f"Archive {archive} is not a directory, skipping deletion")
continue
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shutil.rmtree(archive_path)
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logger.info(f"Finished deleting archives")
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return 0


def main(argv):
clp_home = get_clp_home()
default_config_file_path = clp_home / CLP_DEFAULT_CONFIG_FILE_RELATIVE_PATH

args_parser = argparse.ArgumentParser(description="Delete out-of-dated archive.")
args_parser.add_argument(
"--config",
"-c",
required=True,
default=str(default_config_file_path),
help="CLP configuration file.",
)
args_parser.add_argument(
"begin_ts",
type=int,
help="Time range filter lower-bound (inclusive) as milliseconds" " from the UNIX epoch.",
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)
args_parser.add_argument(
"end_ts",
type=int,
help="Time range filter lower-bound (inclusive) as milliseconds" " from the UNIX epoch.",
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)
parsed_args = args_parser.parse_args(argv[1:])

return handle_file_deletion(
clp_home,
pathlib.Path(parsed_args.config),
default_config_file_path,
parsed_args.begin_ts,
parsed_args.end_ts,
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)


if "__main__" == __name__:
sys.exit(main(sys.argv))
9 changes: 9 additions & 0 deletions components/package-template/src/sbin/del-archives.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
#!/usr/bin/env bash

script_dir="$( cd "$( dirname "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )"
package_root="$script_dir/.."

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PYTHONPATH=$(readlink -f "$package_root/lib/python3/site-packages") \
python3 \
-m clp_package_utils.scripts.del_archives \
"$@"
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