Skip to content

wtsi-hgi/dimsum-automation

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

19 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

dimsum-automation

Automated running of dimsum

Deployment

To connect to the google sheet with experimental data, you'll need the service credentials JSON file, the path to which can be specified in an environment variable, along with the spreadsheet ID and mlwh database connection details (read-only):

export DIMSUM_AUTOMATION_CREDENTIALS_FILE=/path/to/credentials.json
export DIMSUM_AUTOMATION_SPREADSHEET_ID="1ksldfj3lsadfj"
export DIMSUM_AUTOMATION_SQL_HOST=localhost
export DIMSUM_AUTOMATION_SQL_PORT=3306
export DIMSUM_AUTOMATION_SQL_USER=user
export DIMSUM_AUTOMATION_SQL_PASS=pass
export DIMSUM_AUTOMATION_SQL_DB=mlwarehouse

If you put these statements in a .env file that's in the current working directory when you start the server, it will automatically be sourced.

About

Automated running of dimsum

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published