Issues

• new release?

  walaj/svaba#149 · Filter by author 0xaf1f opened on Jun 2, 2026

• [BUG or INTENTION?] H-clip CIGAR advances query position in aligned_coverage loop

  walaj/svaba#148 · Filter by author yslee-genome4me opened on May 7, 2026

• Unexpected end of file

  walaj/svaba#146 · Filter by author lmanchon opened on Oct 27, 2025

• Add an option to stop before creating the vcf to allow filtering for noisy datasets that produce too many candidate SVs

  walaj/svaba#144 · Filter by author amcpherson opened on Jul 15, 2025

• "Failed to rebase" error when installing

  walaj/svaba#143 · Filter by author ahwanpandey opened on Jun 30, 2025

• segmentation fault - tovcf command

  walaj/svaba#141 · Filter by author ahwanpandey opened on Aug 19, 2024

• error while using exome mode

  walaj/svaba#140 · Filter by author onurerdoganmd opened on Jul 27, 2024

• Error: Found chromosome in region file not in reference genome. Skipping

  walaj/svaba#138 · Filter by author shguturu opened on May 24, 2024
  5

• Fastest mode to run svaba

  walaj/svaba#137 · Filter by author geekhriday opened on May 7, 2024

• version number not updated？

  walaj/svaba#136 · Filter by author gudeqing opened on Mar 14, 2024

• Unexpected SV with a zero coordinate

  walaj/svaba#134 · Filter by author gudeqing opened on Feb 22, 2024
  1

• True deletion discarded in final vcf

  walaj/svaba#133 · Filter by author yiqijiang17 opened on Feb 5, 2024

• Genotype quality

  walaj/svaba#131 · Filter by author MikeWLloyd opened on Dec 14, 2023
  2

• Compiling error for missing header files

  walaj/svaba#129 · Filter by author lye2 opened on Oct 13, 2023
  4

• recommended parameters when one chr has higher coverage than the others

  walaj/svaba#128 · Filter by author EHC2019 opened on Sep 9, 2023
  1

• The target SV in *.svaba.sv.vcf is not found in *.alignments.txt.gz

  walaj/svaba#127 · Filter by author hhd1008611 opened on Jul 31, 2023
  4

• Number of sequences in BAM header mismatches reference

  walaj/svaba#126 · Filter by author tnnandi opened on Jul 25, 2023
  5

• Installation issue

  walaj/svaba#124 · Filter by author tnnandi opened on Jul 12, 2023
  10

• "Caught stoi/stod/stof error" in breakpoints file

  walaj/svaba#123 · Filter by author catalinamed opened on Jun 23, 2023

• Is it possible to infer duplications/deletions/translocations/insertions/inversions from SvABA output?

  walaj/svaba#116 · Filter by author Giuseppe1995 opened on Jul 22, 2022
  2

• "Duplicate" kgID when doing annotation.

  walaj/svaba#115 · Filter by author sxwcasd opened on Jun 23, 2022
  2

• Extraction of variant types

  walaj/svaba#111 · Filter by author Danisov opened on Feb 23, 2022

• Recommendation of QUAL?

  walaj/svaba#109 · Filter by author greekkey opened on Dec 15, 2021
  2

• SV and indel size cutoff

  walaj/svaba#108 · Filter by author tgong1 opened on Oct 22, 2021

• ERROR: Unable to open index file: ucsc.hg19.fa, yet it's in the current directory.

  walaj/svaba#107 · Filter by author jamesdalg opened on Oct 15, 2021
  2