Added tutorial page, update publication and code

_data/navigation.yml

@@ -25,9 +25,25 @@ code:
       - title: Datasets
         url: /code_and_data#datasets
 
+tutorials:
+  - title: Tutorials
+    children:
+      - title: Diffusion Models
+        url: /tutorials/diffusion
+      - title: DREAM 2021
+        url: /tutorials/dream2021
+      - title: DREAM 2020
+        url: /tutorials/dream2020
 
-
 dream:
+  - title: Tutorials
+    children:
+      - title: Diffusion Models
+        url: /tutorials/diffusion
+      - title: DREAM 2021
+        url: /tutorials/dream2021
+      - title: DREAM 2020
+        url: /tutorials/dream2020
   - title: DREAM 2021 Tutorial
     children:
       - title: Outline
@@ -42,9 +58,7 @@ dream:
         url: /tutorials/dream2021#teachers
       - title: Support
         url: /tutorials/dream2021#support
-
-      - title: DREAM 2020 Tutorial
-        url: /tutorials/dream2020
+
 main:
   - title: News
     url: /news/
@@ -60,8 +74,8 @@ main:
     url: /join_us/
   - title: Contact
     url: /contact/
-  - title: MICCAI DREAM 2021
-    url: /tutorials/dream2021
+  - title: Tutorials
+    url: /tutorials/
 
 members:
 - title: Academic Staff
@@ -74,6 +88,7 @@ members:
   url: /team#visiting
 - title: Alumni
   url: /team#alumni
+
 news:
   - title: News
     children:
@@ -85,6 +100,7 @@ news:
         url: /news#2020
       - title: 2019
         url: /news#2019
+
 publications:
   - title: Sort by Type
     children:
@@ -124,6 +140,7 @@ publications:
         url: /publications/year#2011
       - title: < 2010
         url: /publications/year#2010
+
 research:
   - title: Research
     children:

_data/publications.yml

@@ -1158,28 +1158,77 @@
 
 ## Conferences.
 
-- "authors": "G. Jacenków; A.Q. O’Neil, S.A. Tsaftaris"
+
+- "authors": "B. Nichyporuk, J. Cardinell, J. Szeto, R. Mehta, J. R. Falet, D. L. Arnold, S.A. Tsaftaris, T. Arbel"
+  "code": null
+  "img" : null
+  "collection": "conferences"
+  "conference": "preprint 2022"
+  "homepage": false
+  "other": null
+  "pdf": null
+  "preprint": "https://arxiv.org/abs/2210.17398"
+  "project": null
+  "published": 2022-10-31
+  "text": null
+  "title": "Rethinking Generalization: The Impact of Annotation Style on Medical Image Segmentation"
+  "url": null
+  "workshop": null
+
+- "authors": "A. Hu, J. R. Falet, B. S. Nichyporuk, C. Shui, D. L. Arnold, S. A. Tsaftaris, T. Arbel"
   "code": null
   "img" : null
   "collection": "conferences"
+  "conference": "preprint 2022"
+  "homepage": false
+  "other": null
+  "pdf": null
+  "preprint": "https://arxiv.org/abs/2211.07820"
+  "project": null
+  "published": 2022-11-09
+  "text": null
+  "title": "Clinically Plausible Pathology-Anatomy Disentanglement in Patient Brain MRI with Structured Variational Priors"
+  "url": null
+  "workshop": null
+
+- "authors": " P. Sanchez, X. Liu, A.Q. O'Neil, S.A. Tsaftaris"
+  "code": "https://github.com/vios-s/DiffAN"
+  "img" : "sanchez_2022_topological.png"
+  "collection": "conferences"
+  "conference": "preprint 2022"
+  "homepage": true
+  "other": null
+  "pdf": null
+  "preprint": "https://arxiv.org/abs/2210.06201"
+  "project": "raeng"
+  "published": 2022-10-03
+  "text": null
+  "title": "Diffusion Models for Causal Discovery via Topological Ordering"
+  "url": null
+  "workshop": null
+
+- "authors": "G. Jacenków; A.Q. O’Neil, S.A. Tsaftaris"
+  "code": "https://github.com/jacenkow/mmbt"
+  "img" : jacen_2022_indication.gif
+  "collection": "conferences"
   "conference": "ISBI 2022"
   "homepage": true
   "other": null
   "pdf": null
-  "preprint": null
+  "preprint": "https://arxiv.org/abs/2202.06076"
   "project": "raeng"
   "published": 2022-07-01
-  "text": null
+  "text": "https://ieeexplore.ieee.org/document/9761567"
   "title": "Indication as Prior Knowledge for Multimodal Disease Classification in Chest Radiographs with Transformers"
-  "url": "https://ieeexplore.ieee.org/document/9761567"
+  "url": null
   "workshop": null
 
 - "authors": "N. Dionelis, S. A. Tsaftaris, M. Y. Vaighan"
   "code": null
   "img" : null
   "collection": "conferences"
   "conference": "ICPR 2022"
-  "homepage": true
+  "homepage": false
   "other": null
   "pdf": null
   "preprint": null
@@ -1209,7 +1258,7 @@
 
 - "authors": "X. Liu, S. Thermos, P. Sanchez, A.Q. O'Neil, S.A. Tsaftaris"
   "code": "https://github.com/vios-s/vMFNet"
-  "img" : "https://github.com/vios-s/vMFNet/blob/main/figures/model.png"
+  "img" : "liu_2022_vMFnet.png"
   "collection": "conferences"
   "conference": "MICCAI 2022"
   "homepage": true
@@ -1218,14 +1267,14 @@
   "preprint": "https://arxiv.org/abs/2206.14538"
   "project": "raeng"
   "published": 2022-09-03
-  "text": null
+  "text": "https://link.springer.com/chapter/10.1007/978-3-031-16449-1_67"
   "title": "vMFNet: Compositionality Meets Domain-generalised Segmentation"
   "url": null
   "workshop": null
 
 - "authors": "P. Sanchez, A. Kascenas, X. Liu, A.Q. O'Neil, S.A. Tsaftaris"
   "code": "https://github.com/vios-s/Diff-SCM"
-  "img" : null
+  "img" : "sanchez_2022_healthy.png"
   "collection": "conferences"
   "conference": "MICCAI Workshop 2022"
   "homepage": true
@@ -1234,7 +1283,7 @@
   "preprint": "https://arxiv.org/abs/2207.12268"
   "project": "raeng"
   "published": 2022-08-02
-  "text": null
+  "text": "https://dl.acm.org/doi/10.1007/978-3-031-18576-2_4"
   "title": "What is Healthy? Generative Counterfactual Diffusion for Lesion Localization"
   "url": null
   "workshop": "Deep Generative Models"
@@ -1282,7 +1331,7 @@
   "preprint": "https://arxiv.org/abs/2206.14541"
   "project": "raeng"
   "published": 2022-02-09
-  "text": null
+  "text": "https://link.springer.com/chapter/10.1007/978-3-031-16452-1_60"
   "title": "Why patient data cannot be easily forgotten?"
   "url": null
   "workshop": null
@@ -1292,7 +1341,7 @@
   "img" : "sanchez_2022_causal_diffusion.png"
   "collection": "conferences"
   "conference": "CLeaR 2022"
-  "homepage": true
+  "homepage": false
   "other": null
   "pdf": null
   "preprint": "http://arxiv.org/abs/2202.10166"
@@ -2918,7 +2967,8 @@
 
 
 - authors: "V. Campello, T. Xia, X. Liu, P. Sanchez, C. Martín-Isla, S.E. Petersen, S. Segui, S.A. Tsaftaris, K. Lekadir"
-  code: null
+  code: "https://github.com/vicmancr/CardiacAging"
+  img: "campello_2022_cardiac_age.jpg"
   collection: "journals"
   edition: "2022"
   homepage: null

_includes/code/code-and-data.html

@@ -1,8 +1,9 @@
 <div id="publications">
     <h2 id="code">Code</h2>
     {% assign code = site.data.publications | where_exp: "item", "item.code" != "" %}
+    {% assign code_sorted = code | sort: "published" | reverse %}
 
-    {% for publication in code %}
+    {% for publication in code_sorted %}
         {% if publication.collection == "journals" %}
         <div class="code">
             <div class="code__picture">

_includes/tutorials/member.html

@@ -0,0 +1,12 @@
+{% include base_path %}
+
+<div>
+  <div class="profile">
+    <div class="profile__context">
+    <h2 class="archive__item-title">
+      <a href="{{ base_path }}{{ member.url }}" rel="permalink">{{ member.shorttitle }}</a>
+    </h2>
+    <p><b>{{ member.summary }}</b></p>
+    </div>
+  </div>
+</div>

_pages/tutorials.md

@@ -0,0 +1,13 @@
+---
+title: "Tutorials"
+
+permalink: /tutorials/
+sidebar:
+  nav: "tutorials"
+---
+
+We often propose tutorials in scientific conferences on various topics related to machine learning and medical imaging. 
+
+{% for member in site.tutorials %}
+    {% include tutorials/member.html %}
+{% endfor %}

_tutorials/diffusion.md

@@ -1,13 +1,15 @@
 ---
-title: "Diffusion Models"
+title: "Diffusion Models For Medical Imaging"
+shorttitle: "Diffusion Models For Medical Imaging"
+summary: Diffusion Models for Medical Imaging
 
 collection: tutorials
 permalink: /tutorials/diffusion
 sidebar:
-  nav: "diffusion"
+  nav: "tutorials"
 ---
 
-Diffusion Models for Medical Imaging
+
 
 
 WIP

_tutorials/dream2020.md

@@ -1,10 +1,11 @@
 ---
-title: "DREAM: Disentangled Representations for Efficient Algorithms for Medical data"
-
+title: "DREAM 2020: Disentangled Representations for Efficient Algorithms for Medical data"
+shorttitle: "DREAM 2020"
+summary: At Miccai 2020, we introduce and motivate the use of disentangled representations in medical imaging and present the latest methods.
 collection: tutorials
 permalink: /tutorials/dream2020
 sidebar:
-  nav: "dream"
+  nav: "tutorials"
 ---
 A MICCAI 2020 (Peru) Tutorial by Sotirios A. Tsaftaris and Alison Q. O'Neil.
 

_tutorials/dream2021.md

@@ -1,6 +1,7 @@
 ---
-title: "DREAM: Disentangled Representations for Efficient Algorithms for Medical data"
-
+title: "DREAM 2021: Disentangled Representations for Efficient Algorithms for Medical data"
+shorttitle: "DREAM 2021"
+summary: At Miccai 2021, we introduce and motivate the use of disentangled representations in medical imaging and present the latest methods.
 collection: tutorials
 permalink: /tutorials/dream2021
 sidebar: