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Request for a test case and clarification on reference and DB paths

Status: Open.

#89 In veg/flea-pipeline;

· jong3 opened on Sep 17, 2024

evo_history is missing time points

bug

Status: Open.

#84 In veg/flea-pipeline;

· kemaleren opened on Oct 21, 2017

Deal with -1 coordinates when there is an insertion before the first reference coord

bug

Status: Open.

#81 In veg/flea-pipeline;

· kemaleren opened on Oct 21, 2017

Re-implement the 'pause to edit alignment' feature

enhancement

Status: Open.

#79 In veg/flea-pipeline;

· kemaleren opened on Oct 19, 2017

Check that <X% of reads are identified as contaminants.

enhancement

Status: Open.

#78 In veg/flea-pipeline;

· kemaleren opened on Oct 19, 2017

Check that error rate cutoff is consistent with contaminant identity

enhancement

Status: Open.

#77 In veg/flea-pipeline;

· kemaleren opened on Oct 19, 2017

Break Nextflow pipeline into sub-pipelines

enhancement

Status: Open.

#75 In veg/flea-pipeline;

· kemaleren opened on Sep 6, 2017

·  

Initial release

Build a Singularity container.

enhancement

Status: Open.

#74 In veg/flea-pipeline;

· kemaleren opened on Sep 6, 2017

·  

Initial release

Dynamic directives for production and development

enhancement

Status: Open.

#72 In veg/flea-pipeline;

· kemaleren opened on Sep 6, 2017

·  

Initial release

Keep high-probability out-of-frame sequences

Status: Open.

#69 In veg/flea-pipeline;

· kemaleren opened on Aug 1, 2016

Better git branch structure

enhancement

Status: Open.

#68 In veg/flea-pipeline;

· kemaleren opened on Jul 18, 2016

Use quality scores in poly head/tail trimming model

enhancement

Status: Open.

#65 In veg/flea-pipeline;

· kemaleren opened on May 15, 2016