fix value translations

uparma · Apr 3, 2024 · 8042c75 · 8042c75
1 parent 2e90f69
commit 8042c75
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Showing 2 changed files with 36 additions and 13 deletions.
diff --git a/jsons/parameters.json b/jsons/parameters.json
@@ -3496,18 +3496,39 @@
         "value_type": "list"
     },
     {
-        "default_value": "",
+        "default_value": false,
         "description": "Is the compensation required? Is the FCS pre-compensated? [TRUE, FALSE]",
         "key_translations": {
-            "cytocluster_style_1": "--compensationRequired",
+            "cytocluster_style_1": "--compensationRequired_<DROP_KEY>",
             "ursgal_style_1": "compensation_required"
         },
         "name": "compensation_required",
         "tag": [
             "cytocluster"
         ],
         "triggers_rerun": true,
-        "value_translations": {},
+        "value_translations": {
+            "cytocluster_style_1": [
+                [
+                    false,
+                    ""
+                ],
+                [
+                    true,
+                    "--compensationRequired"
+                ]
+            ],
+            "ursgal_style_1": [
+                [
+                    false,
+                    false
+                ],
+                [
+                    true,
+                    true
+                ]
+            ]
+        },
         "value_type": "bool"
     },
     {
@@ -10108,9 +10129,9 @@
         "description": "Directory with QC to plot",
         "key_translations": {
             "cytocluster_style_1": "--inputDir",
-            "ursgal_style_1": "input_dir"
+            "ursgal_style_1": "qc_dir"
         },
-        "name": "input_dir",
+        "name": "qc_dir",
         "tag": [
             "cytocluster"
         ],
@@ -13953,9 +13974,9 @@
         "description": "Output directory",
         "key_translations": {
             "cytocluster_style_1": "--outDir",
-            "ursgal_style_1": "out_dir"
+            "ursgal_style_1": "output_dir"
         },
-        "name": "out_dir",
+        "name": "output_dir",
         "tag": [
             "cytocluster"
         ],
@@ -15888,19 +15909,19 @@
         "value_type": "float"
     },
     {
-        "default_value": "",
+        "default_value": [],
         "description": "Which QC methods you want to apply on the FCS file",
         "key_translations": {
             "cytocluster_style_1": "--qcMethod",
-            "ursgal_style_1": "qc_method"
+            "ursgal_style_1": "qc_methods"
         },
-        "name": "qc_method",
+        "name": "qc_methods",
         "tag": [
             "cytocluster"
         ],
         "triggers_rerun": true,
         "value_translations": {},
-        "value_type": "str"
+        "value_type": "list"
     },
     {
         "default_value": null,

diff --git a/jsons/styles.json b/jsons/styles.json
@@ -49,13 +49,15 @@
     },
     {
         "name": "Cytocluster",
-        "reference": "Pirro, S., Ranff, T. CytoCluster is a framework for the analysis of flow cytometry data.",
+        "reference": "Pirro, S. CytoCluster is a framework for the analysis of flow cytometry data.",
         "style": "cytocluster_style_1",
         "versions": [
             "1.2.5",
             "1.2.6",
             "1.2.7",
-            "1.2.8"
+            "1.2.8",
+            "1.2.9",
+            "1.2.10"
         ]
     },
     {