add cytocluster params

uparma · Mar 26, 2024 · 4526693 · 4526693
1 parent abcb16b
commit 4526693
Show file tree

Hide file tree

Showing 2 changed files with 99 additions and 0 deletions.
diff --git a/jsons/parameters.json b/jsons/parameters.json
@@ -21580,5 +21580,96 @@
             "cytocluster_qc"
         ],
         "value_type": "str"
+    },
+    {
+        "description": "Directory with QC to plot",
+        "default_value": "",
+        "key_translations": {
+            "cytocluster_style_1": "--inputDir",
+            "ursgal_style_1": "input_dir"
+        },
+        "name": "input_dir",
+        "tag": [
+            "cytocluster_qc_summary"
+        ],
+        "value_type": "str"
+    },
+    {
+        "description": "Output directory",
+        "default_value": "",
+        "key_translations": {
+            "cytocluster_style_1": "--outDir",
+            "ursgal_style_1": "out_dir"
+        },
+        "name": "out_dir",
+        "tag": [
+            "cytocluster_qc_summary"
+        ],
+        "value_type": "str"
+    },
+    {
+        "description": "FCS file to be preprocessed",
+        "default_value": "",
+        "key_translations": {
+            "cytocluster_style_1": "--fcs",
+            "ursgal_style_1": "fcs_file"
+        },
+        "name": "fcs_file",
+        "tag": [
+            "cytocluster_routine_gating"
+        ],
+        "value_type": "str"
+    },
+    {
+        "description": "Gating strategy into a CSV file",
+        "default_value": "",
+        "key_translations": {
+            "cytocluster_style_1": "--gatingStrategy",
+            "ursgal_style_1": "gating_strategy"
+        },
+        "name": "gating_strategy",
+        "tag": [
+            "cytocluster_routine_gating"
+        ],
+        "value_type": "str"
+    },
+    {
+        "description": "Output directory",
+        "default_value": "",
+        "key_translations": {
+            "cytocluster_style_1": "--outDir",
+            "ursgal_style_1": "out_dir"
+        },
+        "name": "out_dir",
+        "tag": [
+            "cytocluster_routine_gating"
+        ],
+        "value_type": "str"
+    },
+    {
+        "description": "Directory with QC to plot",
+        "default_value": "",
+        "key_translations": {
+            "cytocluster_style_1": "--inputDir",
+            "ursgal_style_1": "input_dir"
+        },
+        "name": "input_dir",
+        "tag": [
+            "cytocluster_routine_gating_summary"
+        ],
+        "value_type": "str"
+    },
+    {
+        "description": "Output directory",
+        "default_value": "",
+        "key_translations": {
+            "cytocluster_style_1": "--outDir",
+            "ursgal_style_1": "out_dir"
+        },
+        "name": "out_dir",
+        "tag": [
+            "cytocluster_routine_gating_summary"
+        ],
+        "value_type": "str"
     }
 ]
diff --git a/jsons/styles.json b/jsons/styles.json
@@ -47,6 +47,14 @@
             "4.1"
         ]
     },
+    {
+        "name": "cytocluster",
+        "reference": "Ursgal2 Team",
+        "style": "cytocluster_style_1",
+        "versions": [
+            "1.2.8"
+        ]
+    },
     {
         "name": "DIA-NN",
         "reference": "Demichev, V., Messner, C.B., Vernardis, S.I. et al. DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput. Nat Methods 17, 41\u201344 (2020)",