added makefile options notes

cxx_ex_f/Makefile

@@ -5,12 +5,16 @@ CXXFLAGS = -std=gnu++11 -Wall -g -O2 -fpic -mtune=native
 # CXXFLAGS = `R CMD config CXX11STD` `R CMD config CXX11FLAGS` `R CMD config CXX11PICFLAGS` 
 
 ## Rmath library for random number generation and other needs
-# CPPFLAGS = `R CMD config CPPFLAGS` -I. -DMATHLIB_STANDALONE -DRNG_Rmath #updated because CPPFLAGS has no content
+# Use if RMATH fully installed
 # CPPFLAGS = -I/usr/include/ -I. -DRNG_Rmath -DMATHLIB_STANDALONE
-# CPPFLAGS = -I. -I./include -DRNG_Rmath -DMATHLIB_STANDALONE
+
+# Use if reference repo specific Rmath
 CPPFLAGS = -I./include -DRNG_Rmath -DMATHLIB_STANDALONE
-# LIB = `R CMD config LDFLAGS` -lRmath # not working
-# LIB = -L/usr/lib/ -lRmath 
+
+# Use if Rmath standalone fully installed
+# LIB = `R CMD config LDFLAGS` -L/usr/lib/ -lRmath 
+
+# Use to reference repo specific Rmath # NOTE this will only run from the shell script due to need to specifify LD_PATH
 LIB = `R CMD config LDFLAGS` -L./slib -lRmath
 
 
@@ -31,49 +35,6 @@ all:
 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -shared `python3.10-config --ldflags` cpbart.o rtnorm.o bart.o bartfuns.o bd.o tree.o treefuns.o pmain_wrap.o pmain.o -o _pmain.so $(LIB)
 
 
-# make at cpbartpPpPp
-# all:
-# 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -c rtnorm.cpp -o rtnorm.o 
-# 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -c bart.cpp -o bart.o
-# 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -c bartfuns.cpp -o bartfuns.o
-# 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -c bd.cpp -o bd.o
-# 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -c tree.cpp -o tree.o
-# 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -c treefuns.cpp -o treefuns.o
-# #	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -c pmain.cpp -o pmain.o
-# 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -c cpbart.cpp -o cpbart.o
-# #	swig -c++ -python -o pmain_wrap.cpp pmain.i
-# #	$(CXX) $(CXXFLAGS) $(CPPFLAGS) `python3-config --cflags` -c pmain_wrap.cpp -o pmain_wrap.o
-# 	swig -c++ -python -o cpbart_wrap.cpp cpbart.i
-# 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) `python3-config --cflags` -c cpbart_wrap.cpp -o cpbart_wrap.o
-# 	$(CXX) $(CXXFLAGS) $(CPPFLAGS) -bundle `python3-config --ldflags` cpbart.o cpbart_wrap.o rtnorm.o bart.o bartfuns.o bd.o tree.o treefuns.o -o _cpbart.so $(LIB)
-
-
-
-
-# .cpp.o : Makefile common.h rn.h
-#	$(CXX) $(CPPFLAGS) $(CXXFLAGS) -c $< -o $*.o
-
-# main.out : Makefile main.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o 
-# 	$(CXX) $(CPPFLAGS) $(CXXFLAGS) main.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o -o main.out $(LIB)
-
-# wmain.out : Makefile cwbart.cpp wmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o 
-# 	$(CXX) $(CPPFLAGS) $(CXXFLAGS) wmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o -o wmain.out $(LIB)
-
-# pmain.out : Makefile cpbart.cpp pmain.o rtnorm.o bart.o bartfuns.o bd.o tree.o treefuns.o
-# 	$(CXX) $(CPPFLAGS) $(CXXFLAGS) pmain.o bart.o bartfuns.o bd.o tree.o treefuns.o rtnorm.o -o pmain.out $(LIB)
-
-# lmain.out : Makefile clbart.cpp lmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o rand_draws.o randomkit.o latent.o
-# 	$(CXX) $(CPPFLAGS) $(CXXFLAGS) lmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o rand_draws.o randomkit.o latent.o -o lmain.out $(LIB)
-
-# mmain.out : Makefile cmbart.cpp mmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o rand_draws.o randomkit.o latent.o
-# 	$(CXX) $(CPPFLAGS) $(CXXFLAGS) mmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o rand_draws.o randomkit.o latent.o -o mmain.out $(LIB)
-
-# dpmain.out : Makefile cdpmbart.cpp dpmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o dp.o dpm.o dps.o
-# 	$(CXX) $(CPPFLAGS) $(CXXFLAGS) dpmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o dp.o dpm.o dps.o -o dpmain.out $(LIB)
-
-# dpmwmain.out : Makefile cdpmwbart.cpp dpmwmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o dp.o dpm.o dps.o
-# 	$(CXX) $(CPPFLAGS) $(CXXFLAGS) dpmwmain.o bart.o bartfuns.o bd.o heterbart.o heterbartfuns.o heterbd.o tree.o treefuns.o dp.o dpm.o dps.o -o dpmwmain.out $(LIB)
-
 clean :
 	rm -f *.o *.so pmain_wrap.cpp  pmain.py cpbart.py