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Fix jit

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Decoding haplotypes without trees #3298

Fix jit
dfd3055
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Codecov / codecov/project failed Oct 16, 2025 in 1s

48.70% (-41.09%) compared to 20d630b

View this Pull Request on Codecov

48.70% (-41.09%) compared to 20d630b

Details

Codecov Report

❌ Patch coverage is 10.30928% with 261 lines in your changes missing coverage. Please review.
✅ Project coverage is 48.70%. Comparing base (20d630b) to head (dfd3055).
⚠️ Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
python/tskit/jit/numba.py 0.00% 211 Missing ⚠️
python/tskit/trees.py 37.50% 37 Missing and 13 partials ⚠️

❗ There is a different number of reports uploaded between BASE (20d630b) and HEAD (dfd3055). Click for more details.

HEAD has 15 uploads less than BASE
Flag BASE (20d630b) HEAD (dfd3055)
c-tests 1 0
python-tests-no-jit 6 0
lwt-tests 1 0
python-c-tests 1 0
python-tests 6 0
Additional details and impacted files
@@             Coverage Diff             @@
##             main    #3298       +/-   ##
===========================================
- Coverage   89.79%   48.70%   -41.09%     
===========================================
  Files          29       18       -11     
  Lines       30962     8479    -22483     
  Branches     5664     1422     -4242     
===========================================
- Hits        27803     4130    -23673     
- Misses       1775     4176     +2401     
+ Partials     1384      173     -1211     
Files with missing lines Coverage Δ
python/tskit/trees.py 66.55% <37.50%> (-32.30%) ⬇️
python/tskit/jit/numba.py 0.00% <0.00%> (-97.91%) ⬇️

... and 23 files with indirect coverage changes

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