Prevent iterating over a TopologyCounter

python/CHANGELOG.rst

@@ -16,6 +16,9 @@
   and a window breakpoint falls within an internal missing interval.
   (:user:`nspope`, :pr:`3176`, :issue:`3175`)
 
+- Prevent iterating over a ``TopologyCounter`` 
+  (:user:`benjeffery` , :pr:`3202`, :issue:`1462`)
+
 --------------------
 [0.6.4] - 2025-05-21
 --------------------

python/tests/test_combinatorics.py

@@ -635,6 +635,11 @@ def verify_topologies(self, ts, sample_sets=None, expected=None):
                         assert actual_topologies == expected[i][sample_set_indexes]
                     assert actual_topologies == actual_inc_topologies
 
+    def test_no_iterate(self):
+        with pytest.raises(TypeError, match="not iterable"):
+            for _ in tskit.Tree.generate_star(3).count_topologies():
+                pass
+
     def subsample_topologies(self, ts, sample_sets, sample_set_indexes):
         subsample_sets = [sample_sets[i] for i in sample_set_indexes]
         topologies = collections.Counter()

python/tskit/combinatorics.py

@@ -541,6 +541,12 @@ def __setitem__(self, sample_set_indexes, counter):
         k = TopologyCounter._to_key(sample_set_indexes)
         self.topologies[k] = counter
 
+    def __iter__(self):
+        raise TypeError(
+            "TopologyCounter object is not iterable, "
+            "iterate over '.topologies' instead"
+        )
+
     @staticmethod
     def _to_key(sample_set_indexes):
         if not isinstance(sample_set_indexes, collections.abc.Iterable):