Update configuration for documentation

.readthedocs.yml

@@ -8,16 +8,16 @@ version: 2
 sphinx:
   configuration: docs/conf.py
 
-# Build documentation with MkDocs
-#mkdocs:
-#  configuration: mkdocs.yml
-
 # Optionally build your docs in additional formats such as PDF
 formats:
   - pdf
 
 python:
-  version: 3.11
   install:
     - requirements: docs/requirements.txt
     - {path: ., method: pip}
+
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.11"

docs/requirements.txt

@@ -1,9 +1,19 @@
+amply>=0.1.4
 docutils<0.18
+flatten_dict
 Jinja2<3.1
+networkx
+openpyxl
+pandas>=1.1
+pydantic<2
+pydot
+pyyaml
 # Requirements file for ReadTheDocs, check .readthedocs.yml.
 # To build the module reference correctly, make sure every external package
 # under `install_requires` in `setup.cfg` is also listed here!
 sphinx>=3.2.1
 sphinx-book-theme
 urllib3<2
 # sphinx_rtd_theme
+#otoole dependencies from setup.cfg
+xlrd

setup.cfg

@@ -41,6 +41,8 @@ python_requires = >=3.9
 # Version specifiers like >=2.2,<3.0 avoid problems due to API changes in
 # new major versions. This works if the required packages follow Semantic Versioning.
 # For more information, check out https://semver.org/.
+
+# If this list changes, update docs/requirements.txt as well.
 install_requires =
     xlrd
     pyyaml